Difference between revisions of "RXN66-353"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SPERMIDINESYN-RXN SPERMIDINESYN-RXN] == * direction: ** REVERSIBLE * common name: ** spermidine_syn...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN66-353 RXN66-353] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-beta_hydroxysteroid_dehyd...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SPERMIDINESYN-RXN SPERMIDINESYN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN66-353 RXN66-353] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** spermidine_synthase
+
** 3-beta_hydroxysteroid_dehydrogenase_isomerase
 +
** ORF
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.5.1.16 EC-2.5.1.16]
+
** [http://enzyme.expasy.org/EC/1.1.1.145 EC-1.1.1.145]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PUTRESCINE]][c] '''+''' 1 [[S-ADENOSYLMETHIONINAMINE]][c] '''<=>''' 1 [[PROTON]][c] '''+''' 1 [[SPERMIDINE]][c] '''+''' 1 [[5-METHYLTHIOADENOSINE]][c]
+
** 1 [[PREGNENOLONE]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[CPD66-28]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 putrescine[c] '''+''' 1 S-adenosyl 3-(methylthio)propylamine[c] '''<=>''' 1 H+[c] '''+''' 1 spermidine[c] '''+''' 1 S-methyl-5'-thioadenosine[c]
+
** 1 pregnenolone[c] '''+''' 1 NAD+[c] '''=>''' 1 NADH[c] '''+''' 1 H+[c] '''+''' 1 pregn-5-ene-3,20-dione[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_16718]]
+
* Gene: [[Tiso_gene_18774]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_17803]]
+
* Gene: [[Tiso_gene_2957]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[athaliana]]
+
* Gene: [[Tiso_gene_897]]
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[annotation-in-silico_annotation]]
−
** [[pantograph]]-[[creinhardtii]]
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_17081]]
+
* Gene: [[Tiso_gene_11016]]
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_16717]]
+
*** Assignment: EC-NUMBER
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[BSUBPOLYAMSYN-PWY]], spermidine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=BSUBPOLYAMSYN-PWY BSUBPOLYAMSYN-PWY]
+
* [[PWY-7299]], progesterone biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7299 PWY-7299]
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''1''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
 
−
** Source: [[orthology-athaliana]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-creinhardtii]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-esiliculosus]]
 
−
*** Tool: [[pantograph]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12721 12721]
+
{{#set: common name=3-beta_hydroxysteroid_dehydrogenase_isomerase}}
−
* LIGAND-RXN:
+
{{#set: common name=ORF}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R01920 R01920]
+
{{#set: ec number=EC-1.1.1.145}}
−
* UNIPROT:
+
{{#set: gene associated=Tiso_gene_18774|Tiso_gene_2957|Tiso_gene_897|Tiso_gene_11016}}
−
** [http://www.uniprot.org/uniprot/P19623 P19623]
+
{{#set: in pathway=PWY-7299}}
−
** [http://www.uniprot.org/uniprot/Q57761 Q57761]
+
{{#set: reconstruction category=annotation}}
−
** [http://www.uniprot.org/uniprot/Q12074 Q12074]
+
{{#set: reconstruction source=annotation-in-silico_annotation}}
−
** [http://www.uniprot.org/uniprot/Q12455 Q12455]
+
{{#set: reconstruction tool=pathwaytools}}
−
** [http://www.uniprot.org/uniprot/P09158 P09158]
+
−
** [http://www.uniprot.org/uniprot/O48660 O48660]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=spermidine_synthase}}
+
−
{{#set: ec number=EC-2.5.1.16}}
+
−
{{#set: gene associated=Tiso_gene_16718|Tiso_gene_17803|Tiso_gene_17081|Tiso_gene_16717}}
+
−
{{#set: in pathway=BSUBPOLYAMSYN-PWY}}
+
−
{{#set: reconstruction category=orthology|annotation}}
+
−
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-athaliana|orthology-creinhardtii|orthology-esiliculosus}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 20:19, 21 March 2018

Reaction RXN66-353

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 3-beta_hydroxysteroid_dehydrogenase_isomerase
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 pregnenolone[c] + 1 NAD+[c] => 1 NADH[c] + 1 H+[c] + 1 pregn-5-ene-3,20-dione[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7299, progesterone biosynthesis: PWY-7299
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN66-353&oldid=47838"