Difference between revisions of "Tiso gene 17170"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=MALIC-NADP-RXN MALIC-NADP-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expa...")
(Created page with "Category:Gene == Gene Tiso_gene_17170 == * right end position: ** 3627 * transcription direction: ** NEGATIVE * left end position: ** 2287 * centisome position: ** 59.1108...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=MALIC-NADP-RXN MALIC-NADP-RXN] ==
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== Gene Tiso_gene_17170 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 3627
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* ec number:
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* transcription direction:
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** [http://enzyme.expasy.org/EC/1.1.1.40 EC-1.1.1.40]
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** NEGATIVE
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* left end position:
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** 2287
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* centisome position:
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** 59.110878   
 
* Synonym(s):
 
* Synonym(s):
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** FNR
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[1.18.1.2-RXN]]
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** 1 [[NADP]][c] '''+''' 1 [[MAL]][c] '''=>''' 1 [[NADPH]][c] '''+''' 1 [[PYRUVATE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 NADP+[c] '''+''' 1 (S)-malate[c] '''=>''' 1 NADPH[c] '''+''' 1 pyruvate[c] '''+''' 1 CO2[c]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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== Genes associated with this reaction  ==
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* Reaction: [[RXN-17897]]
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Genes have been associated with this reaction based on different elements listed below.
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** Source: [[annotation-in-silico_annotation]]
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* [[Tiso_gene_6675]]
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*** Assignment: ec-number
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** [[pantograph]]-[[synechocystis]]
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** Source: [[annotation-experimental_annotation]]
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* [[Tiso_gene_12896]]
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*** Assignment: ec-number
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** [[pantograph]]-[[athaliana]]
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== Pathways associated ==
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** [[pantograph]]-[[synechocystis]]
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* [[PWY-7230]]
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** [[pantograph]]-[[esiliculosus]]
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* [[PWY-101]]
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* [[Tiso_gene_12200]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[PWY-241]], C4 photosynthetic carbon assimilation cycle, NADP-ME type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-241 PWY-241]
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** '''2''' reactions found over '''5''' reactions in the full pathway
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* [[GLUCONEO-PWY]], gluconeogenesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY]
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** '''13''' reactions found over '''13''' reactions in the full pathway
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* [[PWY-7117]], C4 photosynthetic carbon assimilation cycle, PEPCK type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7117 PWY-7117]
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** '''7''' reactions found over '''10''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=3627}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18253 18253]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: left end position=2287}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00216 R00216]
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{{#set: centisome position=59.110878    }}
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* UNIPROT:
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{{#set: common name=FNR}}
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** [http://www.uniprot.org/uniprot/P12628 P12628]
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{{#set: reaction associated=1.18.1.2-RXN|RXN-17897}}
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** [http://www.uniprot.org/uniprot/P06801 P06801]
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{{#set: pathway associated=PWY-7230|PWY-101}}
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** [http://www.uniprot.org/uniprot/P13697 P13697]
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** [http://www.uniprot.org/uniprot/P16243 P16243]
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** [http://www.uniprot.org/uniprot/O48656 O48656]
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** [http://www.uniprot.org/uniprot/P22178 P22178]
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** [http://www.uniprot.org/uniprot/P93139 P93139]
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** [http://www.uniprot.org/uniprot/P34105 P34105]
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** [http://www.uniprot.org/uniprot/P28227 P28227]
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** [http://www.uniprot.org/uniprot/P36444 P36444]
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** [http://www.uniprot.org/uniprot/P40927 P40927]
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** [http://www.uniprot.org/uniprot/P37223 P37223]
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** [http://www.uniprot.org/uniprot/P48163 P48163]
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** [http://www.uniprot.org/uniprot/Q16798 Q16798]
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** [http://www.uniprot.org/uniprot/O50015 O50015]
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** [http://www.uniprot.org/uniprot/O04935 O04935]
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** [http://www.uniprot.org/uniprot/O04936 O04936]
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** [http://www.uniprot.org/uniprot/P37222 P37222]
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** [http://www.uniprot.org/uniprot/Q42888 Q42888]
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** [http://www.uniprot.org/uniprot/Q42889 Q42889]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: ec number=EC-1.1.1.40}}
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{{#set: gene associated=Tiso_gene_6675|Tiso_gene_12896|Tiso_gene_12200}}
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{{#set: in pathway=PWY-241|GLUCONEO-PWY|PWY-7117}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-athaliana|orthology-synechocystis|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph}}
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Latest revision as of 20:20, 21 March 2018

Gene Tiso_gene_17170

  • right end position:
    • 3627
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 2287
  • centisome position:
    • 59.110878
  • Synonym(s):
    • FNR

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_17170&oldid=47935"