Difference between revisions of "RXN-8975"
From metabolic_network
(Created page with "Category:Gene == Gene Tiso_gene_17199 == * left end position: ** 403 * transcription direction: ** NEGATIVE * right end position: ** 2126 * centisome position: ** 10.45124...") |
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8975 RXN-8975] == * direction: ** REVERSIBLE * common name: ** ORF * ec number: ** [http://enzy...") |
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| − | [[Category: | + | [[Category:Reaction]] |
| − | == | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8975 RXN-8975] == |
| − | * | + | * direction: |
| − | + | ** REVERSIBLE | |
| − | + | * common name: | |
| − | ** | + | ** ORF |
| − | * | + | * ec number: |
| − | ** | + | ** [http://enzyme.expasy.org/EC/2.7.8.13 EC-2.7.8.13] |
| − | * | + | |
| − | ** | + | |
* Synonym(s): | * Synonym(s): | ||
| − | == | + | == Reaction Formula == |
| − | * [[ | + | * With identifiers: |
| − | ** | + | ** 1 [[CPD-9646]][c] '''+''' 1 [[C3]][c] '''<=>''' 1 [[C4]][c] '''+''' 1 [[UMP]][c] |
| − | *** | + | * With common name(s): |
| − | + | ** 1 di-trans,octa-cis-undecaprenyl phosphate[c] '''+''' 1 UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine[c] '''<=>''' 1 undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine[c] '''+''' 1 UMP[c] | |
| − | *** | + | |
| − | ** [[ | + | == Genes associated with this reaction == |
| − | == Pathways | + | Genes have been associated with this reaction based on different elements listed below. |
| − | * [[PWY- | + | * Gene: [[Tiso_gene_1604]] |
| − | * [[PWY- | + | ** Source: [[annotation-in-silico_annotation]] |
| − | * [[ | + | *** Assignment: EC-NUMBER |
| − | * [[ | + | ** Source: [[orthology-esiliculosus]] |
| − | * [[ | + | == Pathways == |
| − | * [[ | + | * [[PWY-6471]], peptidoglycan biosynthesis IV (Enterococcus faecium): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6471 PWY-6471] |
| + | ** '''3''' reactions found over '''10''' reactions in the full pathway | ||
| + | * [[PWY-5265]], peptidoglycan biosynthesis II (staphylococci): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5265 PWY-5265] | ||
| + | ** '''3''' reactions found over '''10''' reactions in the full pathway | ||
| + | == Reconstruction information == | ||
| + | * Category: [[orthology]] | ||
| + | ** Source: [[orthology-esiliculosus]] | ||
| + | *** Tool: [[pantograph]] | ||
| + | * Category: [[annotation]] | ||
| + | ** Source: [[annotation-in-silico_annotation]] | ||
| + | *** Tool: [[pathwaytools]] | ||
== External links == | == External links == | ||
| − | + | * RHEA: | |
| − | {{#set: | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21920 21920] |
| − | {{#set: | + | * LIGAND-RXN: |
| − | {{#set: | + | ** [http://www.genome.jp/dbget-bin/www_bget?R05629 R05629] |
| − | {{#set: | + | {{#set: direction=REVERSIBLE}} |
| − | {{#set: pathway | + | {{#set: common name=ORF}} |
| + | {{#set: ec number=EC-2.7.8.13}} | ||
| + | {{#set: gene associated=Tiso_gene_1604}} | ||
| + | {{#set: in pathway=PWY-6471|PWY-5265}} | ||
| + | {{#set: reconstruction category=orthology|annotation}} | ||
| + | {{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}} | ||
| + | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
Latest revision as of 20:20, 21 March 2018
Contents
Reaction RXN-8975
- direction:
- REVERSIBLE
- common name:
- ORF
- ec number:
- Synonym(s):
Reaction Formula
- With identifiers:
- With common name(s):
- 1 di-trans,octa-cis-undecaprenyl phosphate[c] + 1 UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine[c] <=> 1 undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine[c] + 1 UMP[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: Tiso_gene_1604
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: orthology-esiliculosus
- Source: annotation-in-silico_annotation
Pathways
- PWY-6471, peptidoglycan biosynthesis IV (Enterococcus faecium): PWY-6471
- 3 reactions found over 10 reactions in the full pathway
- PWY-5265, peptidoglycan biosynthesis II (staphylococci): PWY-5265
- 3 reactions found over 10 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-esiliculosus
- Tool: pantograph
- Source: orthology-esiliculosus
- Category: annotation
- Source: annotation-in-silico_annotation
- Tool: pathwaytools
- Source: annotation-in-silico_annotation
External links
