Difference between revisions of "RXN-15288"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PGLYCDEHYDROG-RXN PGLYCDEHYDROG-RXN] == * direction: ** REVERSIBLE * common name: ** d-3-phosphogly...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15288 RXN-15288] == * direction: ** LEFT-TO-RIGHT * common name: ** luteolin-7-O-diglucuronide...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PGLYCDEHYDROG-RXN PGLYCDEHYDROG-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15288 RXN-15288] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** d-3-phosphoglycerate_dehydrogenase
+
** luteolin-7-O-diglucuronide peroxidase
 +
** ascorbate_peroxidase
 
** ORF
 
** ORF
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.1.1.95 EC-1.1.1.95]
+
** [http://enzyme.expasy.org/EC/1.11.1.7 EC-1.11.1.7]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[NAD]][c] '''+''' 1 [[G3P]][c] '''<=>''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[3-P-HYDROXYPYRUVATE]][c]
+
** 1 [[HYDROGEN-PEROXIDE]][c] '''+''' 2 [[LUTEOLIN-7-O-BETA-D-DIGLUCURONIDE]][c] '''=>''' 2 [[a-radical-of-luteolin-7-iOi-diglucuronid]][c] '''+''' 2 [[WATER]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 NAD+[c] '''+''' 1 3-phospho-D-glycerate[c] '''<=>''' 1 NADH[c] '''+''' 1 H+[c] '''+''' 1 3-phospho-hydroxypyruvate[c]
+
** 1 hydrogen peroxide[c] '''+''' 2 luteolin 7-O-&beta;-D-diglucuronide[c] '''=>''' 2 a radical of luteolin-7-O-diglucuronide[c] '''+''' 2 H2O[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_15686]]
+
* Gene: [[Tiso_gene_11016]]
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_18904]]
+
*** Assignment: EC-NUMBER
−
** IN-SILICO_ANNOTATION
+
* Gene: [[Tiso_gene_15820]]
−
***AUTOMATED-NAME-MATCH
+
** Source: [[annotation-in-silico_annotation]]
−
** [[pantograph]]-[[esiliculosus]]
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_15687]]
+
* Gene: [[Tiso_gene_16028]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-esiliculosus]]
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_5857]]
−
** EXPERIMENTAL_ANNOTATION
+
** Source: [[orthology-esiliculosus]]
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_6431]]
−
** [[pantograph]]-[[athaliana]]
+
** Source: [[orthology-esiliculosus]]
−
** [[pantograph]]-[[synechocystis]]
+
* Gene: [[Tiso_gene_20206]]
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[orthology-esiliculosus]]
−
** [[pantograph]]-[[creinhardtii]]
+
* Gene: [[Tiso_gene_19683]]
−
* [[Tiso_gene_17123]]
+
** Source: [[orthology-esiliculosus]]
−
** [[pantograph]]-[[esiliculosus]]
+
* Gene: [[Tiso_gene_15962]]
−
* [[Tiso_gene_6223]]
+
** Source: [[annotation-in-silico_annotation]]
−
** IN-SILICO_ANNOTATION
+
*** Assignment: EC-NUMBER
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_17551]]
−
** EXPERIMENTAL_ANNOTATION
+
** Source: [[orthology-esiliculosus]]
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_7067]]
−
* [[Tiso_gene_6224]]
+
** Source: [[orthology-esiliculosus]]
−
** IN-SILICO_ANNOTATION
+
* Gene: [[Tiso_gene_9359]]
−
***EC-NUMBER
+
** Source: [[orthology-esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[SERSYN-PWY]], L-serine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=SERSYN-PWY SERSYN-PWY]
+
* [[PWY-7445]], luteolin triglucuronide degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7445 PWY-7445]
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
−
** Source: [[orthology-athaliana]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-creinhardtii]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-synechocystis]]
 
−
*** Tool: [[pantograph]]
 
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
−
* Category: [[manual]]
 
−
** Source: [[manual-primary_network]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12641 12641]
+
{{#set: common name=luteolin-7-O-diglucuronide peroxidase}}
−
* LIGAND-RXN:
+
{{#set: common name=ascorbate_peroxidase}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R01513 R01513]
+
−
* UNIPROT:
+
−
** [http://www.uniprot.org/uniprot/Q58424 Q58424]
+
−
** [http://www.uniprot.org/uniprot/P43885 P43885]
+
−
** [http://www.uniprot.org/uniprot/P35136 P35136]
+
−
** [http://www.uniprot.org/uniprot/Q9PP40 Q9PP40]
+
−
** [http://www.uniprot.org/uniprot/P0A9T0 P0A9T0]
+
−
** [http://www.uniprot.org/uniprot/P40510 P40510]
+
−
** [http://www.uniprot.org/uniprot/P40054 P40054]
+
−
** [http://www.uniprot.org/uniprot/O49485 O49485]
+
−
** [http://www.uniprot.org/uniprot/P87228 P87228]
+
−
** [http://www.uniprot.org/uniprot/O04130 O04130]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=d-3-phosphoglycerate_dehydrogenase}}
+
 
{{#set: common name=ORF}}
 
{{#set: common name=ORF}}
−
{{#set: ec number=EC-1.1.1.95}}
+
{{#set: ec number=EC-1.11.1.7}}
−
{{#set: gene associated=Tiso_gene_15686|Tiso_gene_18904|Tiso_gene_15687|Tiso_gene_17123|Tiso_gene_6223|Tiso_gene_6224}}
+
{{#set: gene associated=Tiso_gene_11016|Tiso_gene_15820|Tiso_gene_16028|Tiso_gene_5857|Tiso_gene_6431|Tiso_gene_20206|Tiso_gene_19683|Tiso_gene_15962|Tiso_gene_17551|Tiso_gene_7067|Tiso_gene_9359}}
−
{{#set: in pathway=SERSYN-PWY}}
+
{{#set: in pathway=PWY-7445}}
−
{{#set: reconstruction category=orthology|manual|annotation}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
+
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:20, 21 March 2018

Reaction RXN-15288

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • luteolin-7-O-diglucuronide peroxidase
    • ascorbate_peroxidase
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7445, luteolin triglucuronide degradation: PWY-7445
    • 3 reactions found over 4 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-15288&oldid=47970"