Difference between revisions of "PHOSPHORIBOSYL-AMP"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACETYL-COA-ACETYLTRANSFER-RXN ACETYL-COA-ACETYLTRANSFER-RXN] == * direction: ** REVERSIBLE * ec num...")
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=PHOSPHORIBOSYL-AMP PHOSPHORIBOSYL-AMP] == * smiles: ** C(C4(C(C(C(N3(C(C2(=C(N(C1(C(C(C(O1)COP(...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACETYL-COA-ACETYLTRANSFER-RXN ACETYL-COA-ACETYLTRANSFER-RXN] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=PHOSPHORIBOSYL-AMP PHOSPHORIBOSYL-AMP] ==
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* direction:
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* smiles:
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** REVERSIBLE
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** C(C4(C(C(C(N3(C(C2(=C(N(C1(C(C(C(O1)COP([O-])(=O)[O-])O)O))C=N2)N=C3))=N))O4)O)O))OP([O-])([O-])=O
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* ec number:
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* common name:
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** [http://enzyme.expasy.org/EC/2.3.1.9 EC-2.3.1.9]
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** 1-(5-phospho-β-D-ribosyl)-AMP
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* inchi key:
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** InChIKey=RTQMRTSPTLIIHM-KEOHHSTQSA-J
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* molecular weight:
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** 555.288   
 
* Synonym(s):
 
* Synonym(s):
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** 1-(5-phosphoribosyl)-AMP
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** phosphoribosyl-AMP
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** 5-phosphoribosyl-AMP
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** N-(5-phospho-D-ribosyl)-AMP
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** N-(5'-phospho-D-ribosyl)-AMP
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** N1-(5-phospho-D-ribosyl)-AMP
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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* [[HISTCYCLOHYD-RXN]]
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** 2 [[ACETYL-COA]][c] '''<=>''' 1 [[CO-A]][c] '''+''' 1 [[ACETOACETYL-COA]][c]
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* [[PRACH]]
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* With common name(s):
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== Reaction(s) known to produce the compound ==
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** 2 acetyl-CoA[c] '''<=>''' 1 coenzyme A[c] '''+''' 1 acetoacetyl-CoA[c]
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* [[HISTPRATPHYD-RXN]]
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* [[PRADP]]
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== Genes associated with this reaction  ==
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== Reaction(s) of unknown directionality ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_16181]]
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** [[pantograph]]-[[athaliana]]
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* [[Tiso_gene_15327]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_17451]]
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[P162-PWY]], L-glutamate degradation V (via hydroxyglutarate): [http://metacyc.org/META/NEW-IMAGE?object=P162-PWY P162-PWY]
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** '''4''' reactions found over '''11''' reactions in the full pathway
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* [[PWY-5177]], glutaryl-CoA degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5177 PWY-5177]
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** '''3''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-6583]], pyruvate fermentation to butanol I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6583 PWY-6583]
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** '''4''' reactions found over '''8''' reactions in the full pathway
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* [[P163-PWY]], L-lysine fermentation to acetate and butanoate: [http://metacyc.org/META/NEW-IMAGE?object=P163-PWY P163-PWY]
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** '''1''' reactions found over '''10''' reactions in the full pathway
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* [[PWY-6883]], pyruvate fermentation to butanol II (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6883 PWY-6883]
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** '''4''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-5676]], acetyl-CoA fermentation to butanoate II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5676 PWY-5676]
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** '''2''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-6588]], pyruvate fermentation to acetone: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6588 PWY-6588]
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** '''2''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-7779]], methyl tert-butyl ether degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7779 PWY-7779]
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** '''2''' reactions found over '''10''' reactions in the full pathway
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* [[PWY-7778]], 2-methylpropene degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7778 PWY-7778]
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** '''2''' reactions found over '''8''' reactions in the full pathway
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* [[PWY1-3]], polyhydroxybutanoate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY1-3 PWY1-3]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-5789]], 3-hydroxypropanoate/4-hydroxybutanate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5789 PWY-5789]
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** '''8''' reactions found over '''16''' reactions in the full pathway
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* [[PWY-6876]], isopropanol biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6876 PWY-6876]
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** '''2''' reactions found over '''5''' reactions in the full pathway
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* [[CENTFERM-PWY]], pyruvate fermentation to butanoate: [http://metacyc.org/META/NEW-IMAGE?object=CENTFERM-PWY CENTFERM-PWY]
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** '''3''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-7391]], isoprene biosynthesis II (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7391 PWY-7391]
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** '''6''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-5741]], ethylmalonyl-CoA pathway: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5741 PWY-5741]
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** '''2''' reactions found over '''11''' reactions in the full pathway
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* [[PWY-6174]], mevalonate pathway II (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6174 PWY-6174]
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** '''5''' reactions found over '''7''' reactions in the full pathway
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* [[ACETOACETATE-DEG-PWY]], acetoacetate degradation (to acetyl CoA): [http://metacyc.org/META/NEW-IMAGE?object=ACETOACETATE-DEG-PWY ACETOACETATE-DEG-PWY]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY66-367]], ketogenesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-367 PWY66-367]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-7216]], (R)- and (S)-3-hydroxybutanoate biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7216 PWY-7216]
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** '''3''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-922]], mevalonate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-922 PWY-922]
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** '''6''' reactions found over '''7''' reactions in the full pathway
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* [[PWY66-368]], ketolysis: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-368 PWY66-368]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-7401]], crotonate fermentation (to acetate and cyclohexane carboxylate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7401 PWY-7401]
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** '''5''' reactions found over '''17''' reactions in the full pathway
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* [[PWY-6863]], pyruvate fermentation to hexanol (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6863 PWY-6863]
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** '''5''' reactions found over '''11''' reactions in the full pathway
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* [[PWY-7524]], mevalonate pathway III (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7524 PWY-7524]
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** '''4''' reactions found over '''8''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* LIGAND-CPD:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21036 21036]
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** [http://www.genome.jp/dbget-bin/www_bget?C02741 C02741]
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* LIGAND-RXN:
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* HMDB : HMDB12276
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** [http://www.genome.jp/dbget-bin/www_bget?R00238 R00238]
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* CHEBI:
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* UNIPROT:
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=59457 59457]
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** [http://www.uniprot.org/uniprot/Q8CAY6 Q8CAY6]
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* BIGG : prbamp
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** [http://www.uniprot.org/uniprot/P41338 P41338]
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* PUBCHEM:
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** [http://www.uniprot.org/uniprot/P45362 P45362]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=45480652 45480652]
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** [http://www.uniprot.org/uniprot/Q9BWD1 Q9BWD1]
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{{#set: smiles=C(C4(C(C(C(N3(C(C2(=C(N(C1(C(C(C(O1)COP([O-])(=O)[O-])O)O))C=N2)N=C3))=N))O4)O)O))OP([O-])([O-])=O}}
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** [http://www.uniprot.org/uniprot/P45359 P45359]
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{{#set: common name=1-(5-phospho-&beta;-D-ribosyl)-AMP}}
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** [http://www.uniprot.org/uniprot/P24752 P24752]
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{{#set: inchi key=InChIKey=RTQMRTSPTLIIHM-KEOHHSTQSA-J}}
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** [http://www.uniprot.org/uniprot/Q12598 Q12598]
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{{#set: molecular weight=555.288    }}
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** [http://www.uniprot.org/uniprot/P45369 P45369]
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{{#set: common name=1-(5-phosphoribosyl)-AMP|phosphoribosyl-AMP|5-phosphoribosyl-AMP|N-(5-phospho-D-ribosyl)-AMP|N-(5'-phospho-D-ribosyl)-AMP|N1-(5-phospho-D-ribosyl)-AMP}}
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** [http://www.uniprot.org/uniprot/P46707 P46707]
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{{#set: consumed by=HISTCYCLOHYD-RXN|PRACH}}
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** [http://www.uniprot.org/uniprot/P73825 P73825]
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{{#set: produced by=HISTPRATPHYD-RXN|PRADP}}
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** [http://www.uniprot.org/uniprot/Q43637 Q43637]
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** [http://www.uniprot.org/uniprot/Q9UQW6 Q9UQW6]
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** [http://www.uniprot.org/uniprot/Q9Z3Y4 Q9Z3Y4]
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** [http://www.uniprot.org/uniprot/P77852 P77852]
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** [http://www.uniprot.org/uniprot/Q9XD81 Q9XD81]
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** [http://www.uniprot.org/uniprot/Q9ZGI9 Q9ZGI9]
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** [http://www.uniprot.org/uniprot/Q9L8E0 Q9L8E0]
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** [http://www.uniprot.org/uniprot/P14611 P14611]
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** [http://www.uniprot.org/uniprot/P07097 P07097]
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** [http://www.uniprot.org/uniprot/P17764 P17764]
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{{#set: direction=REVERSIBLE}}
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{{#set: ec number=EC-2.3.1.9}}
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{{#set: gene associated=Tiso_gene_16181|Tiso_gene_15327|Tiso_gene_17451}}
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−
{{#set: in pathway=P162-PWY|PWY-5177|PWY-6583|P163-PWY|PWY-6883|PWY-5676|PWY-6588|PWY-7779|PWY-7778|PWY1-3|PWY-5789|PWY-6876|CENTFERM-PWY|PWY-7391|PWY-5741|PWY-6174|ACETOACETATE-DEG-PWY|PWY66-367|PWY-7216|PWY-922|PWY66-368|PWY-7401|PWY-6863|PWY-7524}}
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−
{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-athaliana|orthology-creinhardtii|orthology-synechocystis|orthology-esiliculosus}}
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−
{{#set: reconstruction tool=pantograph}}
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Latest revision as of 21:20, 21 March 2018

Metabolite PHOSPHORIBOSYL-AMP

  • smiles:
    • C(C4(C(C(C(N3(C(C2(=C(N(C1(C(C(C(O1)COP([O-])(=O)[O-])O)O))C=N2)N=C3))=N))O4)O)O))OP([O-])([O-])=O
  • common name:
    • 1-(5-phospho-β-D-ribosyl)-AMP
  • inchi key:
    • InChIKey=RTQMRTSPTLIIHM-KEOHHSTQSA-J
  • molecular weight:
    • 555.288
  • Synonym(s):
    • 1-(5-phosphoribosyl)-AMP
    • phosphoribosyl-AMP
    • 5-phosphoribosyl-AMP
    • N-(5-phospho-D-ribosyl)-AMP
    • N-(5'-phospho-D-ribosyl)-AMP
    • N1-(5-phospho-D-ribosyl)-AMP

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

"C(C4(C(C(C(N3(C(C2(=C(N(C1(C(C(C(O1)COP([O-])(=O)[O-])O)O))C=N2)N=C3))=N))O4)O)O))OP([O-])([O-])=O" cannot be used as a page name in this wiki.




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