Difference between revisions of "Tiso gene 15900"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-698 RXN-698] == * direction: ** LEFT-TO-RIGHT * common name: ** 9-cis-epoxycarotenoid_dioxygena...")
(Created page with "Category:Gene == Gene Tiso_gene_15900 == * right end position: ** 347 * transcription direction: ** POSITIVE * left end position: ** 147 * centisome position: ** 3.1163876...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-698 RXN-698] ==
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== Gene Tiso_gene_15900 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 347
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* common name:
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* transcription direction:
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** 9-cis-epoxycarotenoid_dioxygenase
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** POSITIVE
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** 9-cis-epoxycarotenoid_neoxanthin_cleavage_enzyme-like_protein
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* left end position:
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* ec number:
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** 147
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** [http://enzyme.expasy.org/EC/1.13.11.51 EC-1.13.11.51]
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* centisome position:
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** 3.1163876   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[PROTOHEMEFERROCHELAT-RXN]]
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** 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[CPD-7424]][c] '''=>''' 1 [[CPD-7279]][c] '''+''' 1 [[CPD1F-4]][c]
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* With common name(s):
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** 1 oxygen[c] '''+''' 1 9'-cis-neoxanthin[c] '''=>''' 1 2-cis,4-trans-xanthoxin[c] '''+''' 1 (3S,5R,6R)-3,5-dihydroxy-6,7-didehydro-5,6-dihydro-12'-apo-β-caroten-12'-al[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_4653]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_7740]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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* [[PWY-695]], abscisic acid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-695 PWY-695]
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** '''1''' reactions found over '''5''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-synechocystis]]
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** Source: [[orthology-esiliculosus]]
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** Source: [[orthology-creinhardtii]]
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== Pathways associated ==
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* [[PWY0-1415]]
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* [[HEMESYN2-PWY]]
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* [[HEME-BIOSYNTHESIS-II]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=347}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19677 19677]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=147}}
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** [http://www.genome.jp/dbget-bin/www_bget?R06952 R06952]
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{{#set: centisome position=3.1163876    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=PROTOHEMEFERROCHELAT-RXN}}
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{{#set: common name=9-cis-epoxycarotenoid_dioxygenase}}
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{{#set: pathway associated=PWY0-1415|HEMESYN2-PWY|HEME-BIOSYNTHESIS-II}}
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{{#set: common name=9-cis-epoxycarotenoid_neoxanthin_cleavage_enzyme-like_protein}}
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{{#set: ec number=EC-1.13.11.51}}
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{{#set: gene associated=Tiso_gene_4653|Tiso_gene_7740}}
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{{#set: in pathway=PWY-695}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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Latest revision as of 20:21, 21 March 2018

Gene Tiso_gene_15900

  • right end position:
    • 347
  • transcription direction:
    • POSITIVE
  • left end position:
    • 147
  • centisome position:
    • 3.1163876
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_15900&oldid=47997"