Difference between revisions of "CADAVERINE"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12565 RXN-12565] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-ketoacyl-_thiolase ** ace...")
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CADAVERINE CADAVERINE] == * smiles: ** C([N+])CCCC[N+] * common name: ** cadaverine * inchi key...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12565 RXN-12565] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CADAVERINE CADAVERINE] ==
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* direction:
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* smiles:
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** LEFT-TO-RIGHT
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** C([N+])CCCC[N+]
 
* common name:
 
* common name:
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** 3-ketoacyl-_thiolase
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** cadaverine
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** acetyl-_c-acetyltransferase
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* inchi key:
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** thiolase
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** InChIKey=VHRGRCVQAFMJIZ-UHFFFAOYSA-P
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* ec number:
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* molecular weight:
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** [http://enzyme.expasy.org/EC/2.3.1.16 EC-2.3.1.16]
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** 104.195   
 
* Synonym(s):
 
* Synonym(s):
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** diaminopentane
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** 1,5-Diaminopentane
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** 1,5-pentanediamine
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** pentamethylenediamine
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** BioDex 1-
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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* [[RXN0-5217]]
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** 1 [[BUTYRYL-COA]][c] '''+''' 1 [[ACETYL-COA]][c] '''=>''' 1 [[CO-A]][c] '''+''' 1 [[K-HEXANOYL-COA]][c]
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* [[RXN-11784]]
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* With common name(s):
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== Reaction(s) known to produce the compound ==
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** 1 butanoyl-CoA[c] '''+''' 1 acetyl-CoA[c] '''=>''' 1 coenzyme A[c] '''+''' 1 3-oxohexanoyl-CoA[c]
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* [[LYSDECARBOX-RXN]]
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== Reaction(s) of unknown directionality ==
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_10116]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_3856]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_15327]]
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_3855]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_17451]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_16181]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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** [[pantograph]]-[[creinhardtii]]
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== Pathways  ==
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* [[PWY-6863]], pyruvate fermentation to hexanol (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6863 PWY-6863]
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** '''5''' reactions found over '''11''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* CAS : 462-94-2
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31113 31113]
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* PUBCHEM:
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* LIGAND-RXN:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=3718401 3718401]
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** [http://www.genome.jp/dbget-bin/www_bget?R01177 R01177]
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* HMDB : HMDB02322
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{{#set: direction=LEFT-TO-RIGHT}}
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* LIGAND-CPD:
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{{#set: common name=3-ketoacyl-_thiolase}}
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** [http://www.genome.jp/dbget-bin/www_bget?C01672 C01672]
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{{#set: common name=acetyl-_c-acetyltransferase}}
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* CHEMSPIDER:
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{{#set: common name=thiolase}}
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** [http://www.chemspider.com/Chemical-Structure.2949420.html 2949420]
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{{#set: ec number=EC-2.3.1.16}}
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* CHEBI:
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{{#set: gene associated=Tiso_gene_10116|Tiso_gene_3856|Tiso_gene_15327|Tiso_gene_3855|Tiso_gene_17451|Tiso_gene_16181}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=58384 58384]
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{{#set: in pathway=PWY-6863}}
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* BIGG : 15dap
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: smiles=C([N+])CCCC[N+]}}
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{{#set: reconstruction source=orthology-creinhardtii|orthology-athaliana|annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
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{{#set: common name=cadaverine}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: inchi key=InChIKey=VHRGRCVQAFMJIZ-UHFFFAOYSA-P}}
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{{#set: molecular weight=104.195    }}
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{{#set: common name=diaminopentane|1,5-Diaminopentane|1,5-pentanediamine|pentamethylenediamine|BioDex 1-}}
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{{#set: consumed by=RXN0-5217|RXN-11784}}
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{{#set: produced by=LYSDECARBOX-RXN}}

Latest revision as of 20:21, 21 March 2018

Metabolite CADAVERINE

  • smiles:
    • C([N+])CCCC[N+]
  • common name:
    • cadaverine
  • inchi key:
    • InChIKey=VHRGRCVQAFMJIZ-UHFFFAOYSA-P
  • molecular weight:
    • 104.195
  • Synonym(s):
    • diaminopentane
    • 1,5-Diaminopentane
    • 1,5-pentanediamine
    • pentamethylenediamine
    • BioDex 1-

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

"C([N+])CCCC[N+" cannot be used as a page name in this wiki.




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=CADAVERINE&oldid=48001"