Difference between revisions of "DXPREDISOM-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=MALONYL-COA-ACP-TRANSACYL-RXN MALONYL-COA-ACP-TRANSACYL-RXN] == * direction: ** LEFT-TO-RIGHT * com...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DXPREDISOM-RXN DXPREDISOM-RXN] == * direction: ** REVERSIBLE * common name: ** 1-deoxy-d-xylulose_5...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=MALONYL-COA-ACP-TRANSACYL-RXN MALONYL-COA-ACP-TRANSACYL-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DXPREDISOM-RXN DXPREDISOM-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** polyketide_synthase
+
** 1-deoxy-d-xylulose_5-phosphate_reductoisomerase
−
** malonyl-_:acp_transacylase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
+
** [http://enzyme.expasy.org/EC/1.1.1.267 EC-1.1.1.267]
−
** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
+
−
** [http://enzyme.expasy.org/EC/2.3.1.39 EC-2.3.1.39]
+
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[MALONYL-COA]][c] '''+''' 1 [[ACP]][c] '''=>''' 1 [[CO-A]][c] '''+''' 1 [[MALONYL-ACP]][c]
+
** 1 [[2-C-METHYL-D-ERYTHRITOL-4-PHOSPHATE]][c] '''+''' 1 [[NADP]][c] '''<=>''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[DEOXYXYLULOSE-5P]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 malonyl-CoA[c] '''+''' 1 a holo-[acyl-carrier protein][c] '''=>''' 1 coenzyme A[c] '''+''' 1 a malonyl-[acp][c]
+
** 1 2-C-methyl-D-erythritol 4-phosphate[c] '''+''' 1 NADP+[c] '''<=>''' 1 NADPH[c] '''+''' 1 H+[c] '''+''' 1 1-deoxy-D-xylulose 5-phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_500]]
+
* Gene: [[Tiso_gene_15169]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_10876]]
+
** Source: [[annotation-experimental_annotation]]
−
** IN-SILICO_ANNOTATION
+
*** Assignment: EC-NUMBER
−
***EC-NUMBER
+
** Source: [[orthology-athaliana]]
−
* [[Tiso_gene_136]]
+
** Source: [[orthology-synechocystis]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-esiliculosus]]
−
***EC-NUMBER
+
** Source: [[orthology-creinhardtii]]
−
* [[Tiso_gene_19309]]
+
−
** [[pantograph]]-[[synechocystis]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_135]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_18460]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[synechocystis]]
+
−
* [[Tiso_gene_13394]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6799]], fatty acid biosynthesis (plant mitochondria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6799 PWY-6799]
+
* [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=NONMEVIPP-PWY NONMEVIPP-PWY]
−
** '''1''' reactions found over '''4''' reactions in the full pathway
+
** '''9''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-4381]], fatty acid biosynthesis initiation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4381 PWY-4381]
+
* [[PWY-7560]], methylerythritol phosphate pathway II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7560 PWY-7560]
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
−
* [[PWY-7388]], octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7388 PWY-7388]
+
 
** '''9''' reactions found over '''9''' reactions in the full pathway
 
** '''9''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 +
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-creinhardtii]]
 +
*** Tool: [[pantograph]]
 
** Source: [[orthology-synechocystis]]
 
** Source: [[orthology-synechocystis]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
Line 60: Line 44:
 
** Source: [[manual-primary_network]]
 
** Source: [[manual-primary_network]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13717 13717]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01626 R01626]
+
** [http://www.genome.jp/dbget-bin/www_bget?R05688 R05688]
−
* UNIPROT:
+
{{#set: direction=REVERSIBLE}}
−
** [http://www.uniprot.org/uniprot/P72391 P72391]
+
{{#set: common name=1-deoxy-d-xylulose_5-phosphate_reductoisomerase}}
−
** [http://www.uniprot.org/uniprot/P49327 P49327]
+
{{#set: ec number=EC-1.1.1.267}}
−
** [http://www.uniprot.org/uniprot/O34825 O34825]
+
{{#set: gene associated=Tiso_gene_15169}}
−
** [http://www.uniprot.org/uniprot/Q9RT24 Q9RT24]
+
{{#set: in pathway=NONMEVIPP-PWY|PWY-7560}}
−
** [http://www.uniprot.org/uniprot/Q9JW58 Q9JW58]
+
−
** [http://www.uniprot.org/uniprot/P0AAI9 P0AAI9]
+
−
** [http://www.uniprot.org/uniprot/O24916 O24916]
+
−
** [http://www.uniprot.org/uniprot/Q9JXR4 Q9JXR4]
+
−
** [http://www.uniprot.org/uniprot/Q9ZCJ6 Q9ZCJ6]
+
−
** [http://www.uniprot.org/uniprot/Q9YBK5 Q9YBK5]
+
−
** [http://www.uniprot.org/uniprot/Q9PJ11 Q9PJ11]
+
−
** [http://www.uniprot.org/uniprot/P43712 P43712]
+
−
** [http://www.uniprot.org/uniprot/Q9Z8P1 Q9Z8P1]
+
−
** [http://www.uniprot.org/uniprot/O67041 O67041]
+
−
** [http://www.uniprot.org/uniprot/Q9ZMY1 Q9ZMY1]
+
−
** [http://www.uniprot.org/uniprot/Q9PKF6 Q9PKF6]
+
−
** [http://www.uniprot.org/uniprot/P63458 P63458]
+
−
** [http://www.uniprot.org/uniprot/O84241 O84241]
+
−
** [http://www.uniprot.org/uniprot/Q9WZQ5 Q9WZQ5]
+
−
** [http://www.uniprot.org/uniprot/P71019 P71019]
+
−
** [http://www.uniprot.org/uniprot/P07149 P07149]
+
−
** [http://www.uniprot.org/uniprot/P73242 P73242]
+
−
** [http://www.uniprot.org/uniprot/Q8RU07 Q8RU07]
+
−
** [http://www.uniprot.org/uniprot/Q54205 Q54205]
+
−
** [http://www.uniprot.org/uniprot/O54437 O54437]
+
−
** [http://www.uniprot.org/uniprot/Q56692 Q56692]
+
−
** [http://www.uniprot.org/uniprot/O13698 O13698]
+
−
** [http://www.uniprot.org/uniprot/Q9RA34 Q9RA34]
+
−
** [http://www.uniprot.org/uniprot/O69476 O69476]
+
−
** [http://www.uniprot.org/uniprot/P12276 P12276]
+
−
** [http://www.uniprot.org/uniprot/P12785 P12785]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=polyketide_synthase}}
+
−
{{#set: common name=malonyl-_:acp_transacylase}}
+
−
{{#set: ec number=EC-2.3.1.86}}
+
−
{{#set: ec number=EC-2.3.1.85}}
+
−
{{#set: ec number=EC-2.3.1.39}}
+
−
{{#set: gene associated=Tiso_gene_500|Tiso_gene_10876|Tiso_gene_136|Tiso_gene_19309|Tiso_gene_135|Tiso_gene_18460|Tiso_gene_13394}}
+
−
{{#set: in pathway=PWY-6799|PWY-4381|PWY-7388}}
+
 
{{#set: reconstruction category=orthology|manual|annotation}}
 
{{#set: reconstruction category=orthology|manual|annotation}}
−
{{#set: reconstruction source=annotation-experimental_annotation|manual-primary_network|annotation-in-silico_annotation|orthology-synechocystis|orthology-esiliculosus}}
+
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:21, 21 March 2018

Reaction DXPREDISOM-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • 1-deoxy-d-xylulose_5-phosphate_reductoisomerase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • NONMEVIPP-PWY, methylerythritol phosphate pathway I: NONMEVIPP-PWY
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-7560, methylerythritol phosphate pathway II: PWY-7560
    • 9 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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