Difference between revisions of "4.2.99.18-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RME294 RME294] == * direction: ** LEFT-TO-RIGHT * common name: ** RME294 * Synonym(s): == Reaction...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=4.2.99.18-RXN 4.2.99.18-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** formamidopyrimidine...")
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RME294 RME294] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=4.2.99.18-RXN 4.2.99.18-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** RME294
+
** formamidopyrimidine-dna_glycosylase
 +
** endonuclease_iii
 +
** dna-(apurinic_or_apyrimidinic_site)_lyase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/4.2.99.18 EC-4.2.99.18]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 0.1118 [[L-PHOSPHATIDATE]][c] '''+''' 32.687 [[ATP]][c] '''+''' 0.8456 [[General-Protein-Substrates]][c] '''+''' 0.0402 [[RNA-Holder]][c] '''+''' 32.687 [[WATER]][c] '''+''' 0.0014 [[DNA-Holder]][c] '''+''' 0.0026 [[CHLOROPHYLL-A]][c] '''=>''' 32.687 [[ADP]][c] '''+''' 1.0 [[Biomass-Compositions]][c] '''+''' 32.687 [[PROTON]][c] '''+''' 32.687 [[Pi]][c]
+
** 1 [[DNA-containing-abasic-Sites]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[5-Phospho-terminated-DNAs]][c] '''+''' 1 [[3-terminal-unsaturated-sugars]][c]
 
* With common name(s):
 
* With common name(s):
−
**
+
** 1 a DNA containing an apurinic/apyrimidinic site[c] '''=>''' 1 H+[c] '''+''' 1 a 5'-phospho-[DNA][c] '''+''' 1 a 3'-terminal unsaturated sugar[c]
 +
 
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Tiso_gene_6558]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_5102]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_17380]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_14609]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_1280]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[manual]]
+
* Category: [[orthology]]
−
** Source: [[manual-primary_network]]
+
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P0AB83 P0AB83]
 +
** [http://www.uniprot.org/uniprot/P28352 P28352]
 +
** [http://www.uniprot.org/uniprot/Q58829 Q58829]
 +
** [http://www.uniprot.org/uniprot/Q9PHS1 Q9PHS1]
 +
** [http://www.uniprot.org/uniprot/Q9JVT0 Q9JVT0]
 +
** [http://www.uniprot.org/uniprot/Q9PNL1 Q9PNL1]
 +
** [http://www.uniprot.org/uniprot/P44319 P44319]
 +
** [http://www.uniprot.org/uniprot/Q9CGM5 Q9CGM5]
 +
** [http://www.uniprot.org/uniprot/P04418 P04418]
 +
** [http://www.uniprot.org/uniprot/P27695 P27695]
 +
** [http://www.uniprot.org/uniprot/P23196 P23196]
 +
** [http://www.uniprot.org/uniprot/P22936 P22936]
 +
** [http://www.uniprot.org/uniprot/P43138 P43138]
 +
** [http://www.uniprot.org/uniprot/P95945 P95945]
 +
** [http://www.uniprot.org/uniprot/P50525 P50525]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=RME294}}
+
{{#set: common name=formamidopyrimidine-dna_glycosylase}}
 +
{{#set: common name=endonuclease_iii}}
 +
{{#set: common name=dna-(apurinic_or_apyrimidinic_site)_lyase}}
 +
{{#set: ec number=EC-4.2.99.18}}
 +
{{#set: gene associated=Tiso_gene_6558|Tiso_gene_5102|Tiso_gene_17380|Tiso_gene_14609|Tiso_gene_1280}}
 
{{#set: in pathway=}}
 
{{#set: in pathway=}}
−
{{#set: reconstruction category=manual}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=manual-primary_network}}
+
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:21, 21 March 2018

Reaction 4.2.99.18-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • formamidopyrimidine-dna_glycosylase
    • endonuclease_iii
    • dna-(apurinic_or_apyrimidinic_site)_lyase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=4.2.99.18-RXN&oldid=48095"