Difference between revisions of "Tiso gene 2485"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11246 RXN-11246] == * direction: ** LEFT-TO-RIGHT * common name: ** thiolase ** acetyl-_c-acety...")
(Created page with "Category:Gene == Gene Tiso_gene_2485 == * right end position: ** 5826 * transcription direction: ** NEGATIVE * left end position: ** 3231 * centisome position: ** 16.80362...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11246 RXN-11246] ==
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== Gene Tiso_gene_2485 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 5826
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* common name:
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* transcription direction:
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** thiolase
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** NEGATIVE
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** acetyl-_c-acetyltransferase
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* left end position:
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** 3-ketoacyl-_thiolase
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** 3231
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/2.3.1.16 EC-2.3.1.16]
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** 16.80362   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[ARGSUCCINLYA-RXN]]
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** 1 [[CPD-10600]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[CPD-201]][c] '''+''' 1 [[ACETYL-COA]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 4-hydroxybenzoyl-acetyl-CoA[c] '''+''' 1 coenzyme A[c] '''=>''' 1 4-hydroxybenzoyl-CoA[c] '''+''' 1 acetyl-CoA[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_3856]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_10116]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_3855]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_15327]]
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_17451]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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* [[PWY-6435]], 4-hydroxybenzoate biosynthesis V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6435 PWY-6435]
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** '''4''' reactions found over '''5''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-synechocystis]]
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** Source: [[orthology-esiliculosus]]
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** Source: [[orthology-creinhardtii]]
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* Reaction: [[RXN-22]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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** Source: [[orthology-esiliculosus]]
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== Pathways associated ==
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* [[PWY-5154]]
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* [[PWY-5]]
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* [[ARGSYN-PWY]]
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* [[PWY-4984]]
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* [[ARGSYNBSUB-PWY]]
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* [[PWY-4983]]
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* [[PWY-7400]]
 
== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: right end position=5826}}
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{{#set: common name=thiolase}}
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{{#set: transcription direction=NEGATIVE}}
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{{#set: common name=acetyl-_c-acetyltransferase}}
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{{#set: left end position=3231}}
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{{#set: common name=3-ketoacyl-_thiolase}}
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{{#set: centisome position=16.80362    }}
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{{#set: ec number=EC-2.3.1.16}}
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{{#set: reaction associated=ARGSUCCINLYA-RXN|RXN-22}}
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{{#set: gene associated=Tiso_gene_3856|Tiso_gene_10116|Tiso_gene_3855|Tiso_gene_15327|Tiso_gene_17451}}
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{{#set: pathway associated=PWY-5154|PWY-5|ARGSYN-PWY|PWY-4984|ARGSYNBSUB-PWY|PWY-4983|PWY-7400}}
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{{#set: in pathway=PWY-6435}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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Latest revision as of 20:22, 21 March 2018

Gene Tiso_gene_2485

  • right end position:
    • 5826
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 3231
  • centisome position:
    • 16.80362
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_2485&oldid=48244"