Difference between revisions of "IDS2"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=AMP-DEAMINASE-RXN AMP-DEAMINASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** amp_deamina...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=IDS2 IDS2] == * direction: ** LEFT-TO-RIGHT * common name: ** dimethylallyl-diphosphate synthase *...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=AMP-DEAMINASE-RXN AMP-DEAMINASE-RXN] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=IDS2 IDS2] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** amp_deaminase
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** dimethylallyl-diphosphate synthase
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* ec number:
+
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** [http://enzyme.expasy.org/EC/3.5.4.17 EC-3.5.4.17]
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** [http://enzyme.expasy.org/EC/3.5.4.6 EC-3.5.4.6]
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* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PROTON]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[IMP]][c] '''+''' 1 [[AMMONIUM]][c]
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** 1.0 [[PROTON]][h] '''+''' 1.0 [[NADPH]][h] '''+''' 1.0 [[HYDROXY-METHYL-BUTENYL-DIP]][h] '''=>''' 1.0 [[CPD-4211]][h] '''+''' 1.0 [[WATER]][h] '''+''' 1.0 [[NADP]][h]
 
* With common name(s):
 
* With common name(s):
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** 1 H+[c] '''+''' 1 AMP[c] '''+''' 1 H2O[c] '''=>''' 1 IMP[c] '''+''' 1 ammonium[c]
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** 1.0 H+[h] '''+''' 1.0 NADPH[h] '''+''' 1.0 (E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate[h] '''=>''' 1.0 dimethylallyl diphosphate[h] '''+''' 1.0 H2O[h] '''+''' 1.0 NADP+[h]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_1778]]
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* Gene: [[Tiso_gene_5609]]
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** IN-SILICO_ANNOTATION
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** Source: [[orthology-creinhardtii]]
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
 
== Pathways  ==
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* [[PWY-6596]], adenosine nucleotides degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6596 PWY-6596]
 
−
** '''8''' reactions found over '''8''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
−
** Source: [[orthology-esiliculosus]]
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** Source: [[orthology-creinhardtii]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
−
* Category: [[annotation]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14777 14777]
 
−
* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R00181 R00181]
 
−
* UNIPROT:
 
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** [http://www.uniprot.org/uniprot/P10759 P10759]
 
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** [http://www.uniprot.org/uniprot/Q02356 Q02356]
 
−
** [http://www.uniprot.org/uniprot/P23109 P23109]
 
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** [http://www.uniprot.org/uniprot/P15274 P15274]
 
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** [http://www.uniprot.org/uniprot/Q7M3H8 Q7M3H8]
 
−
** [http://www.uniprot.org/uniprot/Q01433 Q01433]
 
−
** [http://www.uniprot.org/uniprot/Q01432 Q01432]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=amp_deaminase}}
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{{#set: common name=dimethylallyl-diphosphate synthase}}
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{{#set: ec number=EC-3.5.4.17}}
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{{#set: gene associated=Tiso_gene_5609}}
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{{#set: ec number=EC-3.5.4.6}}
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{{#set: in pathway=}}
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{{#set: gene associated=Tiso_gene_1778}}
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{{#set: reconstruction category=orthology}}
−
{{#set: in pathway=PWY-6596}}
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{{#set: reconstruction source=orthology-creinhardtii}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 20:22, 21 March 2018

Reaction IDS2

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • dimethylallyl-diphosphate synthase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 H+[h] + 1.0 NADPH[h] + 1.0 (E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate[h] => 1.0 dimethylallyl diphosphate[h] + 1.0 H2O[h] + 1.0 NADP+[h]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=IDS2&oldid=48262"