Difference between revisions of "Tiso gene 1163"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SPERMINE-SYNTHASE-RXN SPERMINE-SYNTHASE-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http...")
(Created page with "Category:Gene == Gene Tiso_gene_1163 == * right end position: ** 14054 * transcription direction: ** POSITIVE * left end position: ** 12300 * centisome position: ** 48.240...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SPERMINE-SYNTHASE-RXN SPERMINE-SYNTHASE-RXN] ==
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== Gene Tiso_gene_1163 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 14054
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* ec number:
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* transcription direction:
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** [http://enzyme.expasy.org/EC/2.5.1.22 EC-2.5.1.22]
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** POSITIVE
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* left end position:
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** 12300
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* centisome position:
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** 48.240967   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[DIACYLGLYKIN-RXN]]
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** 1 [[SPERMIDINE]][c] '''+''' 1 [[S-ADENOSYLMETHIONINAMINE]][c] '''=>''' 1 [[SPERMINE]][c] '''+''' 1 [[5-METHYLTHIOADENOSINE]][c] '''+''' 1 [[PROTON]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 spermidine[c] '''+''' 1 S-adenosyl 3-(methylthio)propylamine[c] '''=>''' 1 spermine[c] '''+''' 1 S-methyl-5'-thioadenosine[c] '''+''' 1 H+[c]
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* Reaction: [[NAD-KIN-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: ec-number
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN3DJ-11417]]
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* [[Tiso_gene_17803]]
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[esiliculosus]]
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*** Assignment: automated-name-match
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* [[Tiso_gene_17081]]
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* Reaction: [[SPHINGANINE-KINASE-RXN]]
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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== Pathways  ==
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* [[ARGSPECAT-PWY]], spermine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=ARGSPECAT-PWY ARGSPECAT-PWY]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[POLYAMINSYN3-PWY]], superpathway of polyamine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=POLYAMINSYN3-PWY POLYAMINSYN3-PWY]
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** '''3''' reactions found over '''7''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-creinhardtii]]
 
** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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== Pathways associated ==
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** Source: [[orthology-esiliculosus]]
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* [[PWY3DJ-11470]]
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*** Tool: [[pantograph]]
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* [[PWY-7268]]
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* [[PWY-7269]]
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* [[PWY-7817]]
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* [[PWY-5129]]
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* [[PWY-5083]]
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* [[NADPHOS-DEPHOS-PWY-1]]
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* [[PWY-7119]]
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* [[PWY-7039]]
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* [[NADPHOS-DEPHOS-PWY]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=14054}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19973 19973]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=12300}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02869 R02869]
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{{#set: centisome position=48.240967    }}
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* UNIPROT:
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{{#set: reaction associated=DIACYLGLYKIN-RXN|NAD-KIN-RXN|RXN3DJ-11417|SPHINGANINE-KINASE-RXN}}
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** [http://www.uniprot.org/uniprot/P52788 P52788]
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{{#set: pathway associated=PWY3DJ-11470|PWY-7268|PWY-7269|PWY-7817|PWY-5129|PWY-5083|NADPHOS-DEPHOS-PWY-1|PWY-7119|PWY-7039|NADPHOS-DEPHOS-PWY}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: ec number=EC-2.5.1.22}}
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{{#set: gene associated=Tiso_gene_17803|Tiso_gene_17081}}
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{{#set: in pathway=ARGSPECAT-PWY|POLYAMINSYN3-PWY}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-creinhardtii|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph}}
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Latest revision as of 20:24, 21 March 2018

Gene Tiso_gene_1163

  • right end position:
    • 14054
  • transcription direction:
    • POSITIVE
  • left end position:
    • 12300
  • centisome position:
    • 48.240967
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_1163&oldid=48537"