Difference between revisions of "Tiso gene 6815"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17472 RXN-17472] == * direction: ** LEFT-TO-RIGHT * common name: ** biotin_synthase * Synonym(s...")
(Created page with "Category:Gene == Gene Tiso_gene_6815 == * right end position: ** 4234 * transcription direction: ** POSITIVE * left end position: ** 425 * centisome position: ** 3.6004744...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17472 RXN-17472] ==
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== Gene Tiso_gene_6815 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 4234
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* common name:
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* transcription direction:
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** biotin_synthase
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** POSITIVE
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* left end position:
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** 425
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* centisome position:
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** 3.6004744   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[ASPAMINOTRANS-RXN]]
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** 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[DETHIOBIOTIN]][c] '''+''' 1 [[Sulfurated-Sulfur-Acceptors]][c] '''+''' 2 [[Reduced-2Fe-2S-Ferredoxins]][c] '''=>''' 1 [[MET]][c] '''+''' 1 [[CPD-5662]][c] '''+''' 2 [[Oxidized-2Fe-2S-Ferredoxins]][c] '''+''' 1 [[Unsulfurated-Sulfur-Acceptors]][c] '''+''' 1 [[CH33ADO]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 S-adenosyl-L-methionine[c] '''+''' 1 H+[c] '''+''' 1 dethiobiotin[c] '''+''' 1 a sulfurated [sulfur carrier][c] '''+''' 2 a reduced [2Fe-2S] ferredoxin[c] '''=>''' 1 L-methionine[c] '''+''' 1 9-mercaptodethiobiotin[c] '''+''' 2 an oxidized [2Fe-2S] ferredoxin[c] '''+''' 1 an unsulfurated [sulfur carrier][c] '''+''' 1 5'-deoxyadenosine[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_10345]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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** EXPERIMENTAL_ANNOTATION
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***AUTOMATED-NAME-MATCH
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== Pathways  ==
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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** Source: [[orthology-synechocystis]]
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** Source: [[orthology-creinhardtii]]
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* Reaction: [[CYSTEINE-AMINOTRANSFERASE-RXN]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: automated-name-match
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** Source: [[orthology-creinhardtii]]
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* Reaction: [[PHEAMINOTRANS-RXN]]
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-synechocystis]]
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** Source: [[orthology-creinhardtii]]
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** Source: [[orthology-creinhardtii]]
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* Reaction: [[PREPHENATEDEHYDRAT-RXN]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-10814]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-11737]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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** Source: [[orthology-creinhardtii]]
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* Reaction: [[RXN-13697]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[TYROSINE-AMINOTRANSFERASE-RXN]]
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** Source: [[orthology-synechocystis]]
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== Pathways associated ==
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* [[TYRSYN]]
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* [[PWY-7383]]
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* [[ASPARTATESYN-PWY]]
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* [[PWY-7117]]
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* [[PWY-7115]]
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* [[PWY-5754]]
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* [[PWY-5329]]
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* [[PWY-5048]]
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* [[PWY-5913]]
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* [[PWY-6643]]
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* [[PWY-6642]]
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* [[PWY-7432]]
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* [[PWY-7518]]
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* [[PWY-7514]]
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* [[MALATE-ASPARTATE-SHUTTLE-PWY]]
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* [[TYRFUMCAT-PWY]]
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* [[PWY-3581]]
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* [[ASPARTATE-DEG1-PWY]]
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* [[PWY0-1534]]
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* [[PWY-5886]]
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* [[GLUTDEG-PWY]]
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* [[PWY-6318]]
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* [[PWY-5079]]
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* [[ANAPHENOXI-PWY]]
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* [[PWY3O-4108]]
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* [[PHESYN]]
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* [[PWY-6638]]
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* [[ASPARAGINE-DEG1-PWY-1]]
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* [[PWY-5151]]
 
== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: right end position=4234}}
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{{#set: common name=biotin_synthase}}
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{{#set: transcription direction=POSITIVE}}
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{{#set: gene associated=Tiso_gene_10345}}
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{{#set: left end position=425}}
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{{#set: in pathway=}}
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{{#set: centisome position=3.6004744    }}
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{{#set: reconstruction category=annotation}}
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{{#set: reaction associated=ASPAMINOTRANS-RXN|CYSTEINE-AMINOTRANSFERASE-RXN|PHEAMINOTRANS-RXN|PREPHENATEDEHYDRAT-RXN|RXN-10814|RXN-11737|RXN-13697|TYROSINE-AMINOTRANSFERASE-RXN}}
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{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation}}
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{{#set: pathway associated=TYRSYN|PWY-7383|ASPARTATESYN-PWY|PWY-7117|PWY-7115|PWY-5754|PWY-5329|PWY-5048|PWY-5913|PWY-6643|PWY-6642|PWY-7432|PWY-7518|PWY-7514|MALATE-ASPARTATE-SHUTTLE-PWY|TYRFUMCAT-PWY|PWY-3581|ASPARTATE-DEG1-PWY|PWY0-1534|PWY-5886|GLUTDEG-PWY|PWY-6318|PWY-5079|ANAPHENOXI-PWY|PWY3O-4108|PHESYN|PWY-6638|ASPARAGINE-DEG1-PWY-1|PWY-5151}}
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{{#set: reconstruction tool=pathwaytools}}
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Latest revision as of 20:24, 21 March 2018

Gene Tiso_gene_6815

  • right end position:
    • 4234
  • transcription direction:
    • POSITIVE
  • left end position:
    • 425
  • centisome position:
    • 3.6004744
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_6815&oldid=48545"