Difference between revisions of "ISPH2-RXN"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-18203 RXN-18203] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula == * With...") |
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ISPH2-RXN ISPH2-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF * ec number: ** [http:/...") |
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[[Category:Reaction]] | [[Category:Reaction]] | ||
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object= | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ISPH2-RXN ISPH2-RXN] == |
* direction: | * direction: | ||
** LEFT-TO-RIGHT | ** LEFT-TO-RIGHT | ||
| + | * common name: | ||
| + | ** ORF | ||
| + | * ec number: | ||
| + | ** [http://enzyme.expasy.org/EC/1.17.7.4 EC-1.17.7.4] | ||
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
| − | ** 1 [[ | + | ** 1 [[HYDROXY-METHYL-BUTENYL-DIP]][c] '''+''' 2 [[Reduced-ferredoxins]][c] '''+''' 2 [[PROTON]][c] '''=>''' 1 [[DELTA3-ISOPENTENYL-PP]][c] '''+''' 1 [[WATER]][c] '''+''' 2 [[Oxidized-ferredoxins]][c] |
* With common name(s): | * With common name(s): | ||
| − | ** 1 3- | + | ** 1 (E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate[c] '''+''' 2 a reduced ferredoxin [iron-sulfur] cluster[c] '''+''' 2 H+[c] '''=>''' 1 isopentenyl diphosphate[c] '''+''' 1 H2O[c] '''+''' 2 an oxidized ferredoxin [iron-sulfur] cluster[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
| + | Genes have been associated with this reaction based on different elements listed below. | ||
| + | * Gene: [[Tiso_gene_5609]] | ||
| + | ** Source: [[annotation-in-silico_annotation]] | ||
| + | *** Assignment: EC-NUMBER | ||
| + | ** Source: [[annotation-experimental_annotation]] | ||
| + | *** Assignment: EC-NUMBER | ||
| + | ** Source: [[orthology-athaliana]] | ||
| + | ** Source: [[orthology-synechocystis]] | ||
| + | ** Source: [[orthology-esiliculosus]] | ||
== Pathways == | == Pathways == | ||
| − | * [[ | + | * [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=NONMEVIPP-PWY NONMEVIPP-PWY] |
| − | ** ''' | + | ** '''9''' reactions found over '''9''' reactions in the full pathway |
| + | * [[PWY-7560]], methylerythritol phosphate pathway II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7560 PWY-7560] | ||
| + | ** '''9''' reactions found over '''9''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
| − | * [[annotation]]: | + | * Category: [[orthology]] |
| − | ** [[pathwaytools]]: | + | ** Source: [[orthology-athaliana]] |
| − | *** [[ | + | *** Tool: [[pantograph]] |
| + | ** Source: [[orthology-synechocystis]] | ||
| + | *** Tool: [[pantograph]] | ||
| + | ** Source: [[orthology-esiliculosus]] | ||
| + | *** Tool: [[pantograph]] | ||
| + | * Category: [[manual]] | ||
| + | ** Source: [[manual-primary_network]] | ||
| + | * Category: [[annotation]] | ||
| + | ** Source: [[annotation-in-silico_annotation]] | ||
| + | *** Tool: [[pathwaytools]] | ||
| + | ** Source: [[annotation-experimental_annotation]] | ||
| + | *** Tool: [[pathwaytools]] | ||
== External links == | == External links == | ||
| + | * LIGAND-RXN: | ||
| + | ** [http://www.genome.jp/dbget-bin/www_bget?R08209 R08209] | ||
| + | ** [http://www.genome.jp/dbget-bin/www_bget?R05884 R05884] | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
| − | {{#set: in pathway= | + | {{#set: common name=ORF}} |
| − | {{#set: reconstruction category=annotation}} | + | {{#set: ec number=EC-1.17.7.4}} |
| − | {{#set: reconstruction | + | {{#set: gene associated=Tiso_gene_5609}} |
| − | {{#set: reconstruction | + | {{#set: in pathway=NONMEVIPP-PWY|PWY-7560}} |
| + | {{#set: reconstruction category=orthology|manual|annotation}} | ||
| + | {{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network}} | ||
| + | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
Latest revision as of 19:32, 21 March 2018
Contents
Reaction ISPH2-RXN
- direction:
- LEFT-TO-RIGHT
- common name:
- ORF
- ec number:
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 HYDROXY-METHYL-BUTENYL-DIP[c] + 2 Reduced-ferredoxins[c] + 2 PROTON[c] => 1 DELTA3-ISOPENTENYL-PP[c] + 1 WATER[c] + 2 Oxidized-ferredoxins[c]
- With common name(s):
- 1 (E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate[c] + 2 a reduced ferredoxin [iron-sulfur] cluster[c] + 2 H+[c] => 1 isopentenyl diphosphate[c] + 1 H2O[c] + 2 an oxidized ferredoxin [iron-sulfur] cluster[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: Tiso_gene_5609
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-experimental_annotation
- Assignment: EC-NUMBER
- Source: orthology-athaliana
- Source: orthology-synechocystis
- Source: orthology-esiliculosus
- Source: annotation-in-silico_annotation
Pathways
- NONMEVIPP-PWY, methylerythritol phosphate pathway I: NONMEVIPP-PWY
- 9 reactions found over 9 reactions in the full pathway
- PWY-7560, methylerythritol phosphate pathway II: PWY-7560
- 9 reactions found over 9 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-athaliana
- Tool: pantograph
- Source: orthology-synechocystis
- Tool: pantograph
- Source: orthology-esiliculosus
- Tool: pantograph
- Source: orthology-athaliana
- Category: manual
- Source: manual-primary_network
- Category: annotation
- Source: annotation-in-silico_annotation
- Tool: pathwaytools
- Source: annotation-experimental_annotation
- Tool: pathwaytools
- Source: annotation-in-silico_annotation
External links
