Difference between revisions of "SAMDECARB-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUCOKIN-RXN GLUCOKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** glucokinase ** hexoki...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SAMDECARB-RXN SAMDECARB-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** s-adenosylmethionin...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUCOKIN-RXN GLUCOKIN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SAMDECARB-RXN SAMDECARB-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** glucokinase
+
** s-adenosylmethionine_decarboxylase_proenzyme
−
** hexokinase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.7.1.1 EC-2.7.1.1]
+
** [http://enzyme.expasy.org/EC/4.1.1.50 EC-4.1.1.50]
−
** [http://enzyme.expasy.org/EC/2.7.1.2 EC-2.7.1.2]
+
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ATP]][c] '''+''' 1 [[Glucopyranose]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[D-glucopyranose-6-phosphate]][c] '''+''' 1 [[PROTON]][c]
+
** 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[S-ADENOSYLMETHIONINAMINE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 ATP[c] '''+''' 1 D-glucopyranose[c] '''=>''' 1 ADP[c] '''+''' 1 D-glucopyranose 6-phosphate[c] '''+''' 1 H+[c]
+
** 1 S-adenosyl-L-methionine[c] '''+''' 1 H+[c] '''=>''' 1 S-adenosyl 3-(methylthio)propylamine[c] '''+''' 1 CO2[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_3107]]
+
* Gene: [[Tiso_gene_4269]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: EC-NUMBER
−
** EXPERIMENTAL_ANNOTATION
+
* Gene: [[Tiso_gene_11030]]
−
***AUTOMATED-NAME-MATCH
+
** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_1303]]
+
*** Assignment: EC-NUMBER
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-athaliana]]
−
***EC-NUMBER
+
** Source: [[orthology-esiliculosus]]
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[synechocystis]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7238]], sucrose biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7238 PWY-7238]
+
* [[ARGSPECAT-PWY]], spermine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=ARGSPECAT-PWY ARGSPECAT-PWY]
−
** '''6''' reactions found over '''8''' reactions in the full pathway
+
−
* [[GLYCOCAT-PWY]], glycogen degradation I: [http://metacyc.org/META/NEW-IMAGE?object=GLYCOCAT-PWY GLYCOCAT-PWY]
+
−
** '''6''' reactions found over '''8''' reactions in the full pathway
+
−
* [[TREDEGLOW-PWY]], trehalose degradation I (low osmolarity): [http://metacyc.org/META/NEW-IMAGE?object=TREDEGLOW-PWY TREDEGLOW-PWY]
+
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
−
* [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY]
+
−
** '''11''' reactions found over '''15''' reactions in the full pathway
+
−
* [[PWY-7385]], 1,3-propanediol biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7385 PWY-7385]
+
−
** '''5''' reactions found over '''9''' reactions in the full pathway
+
−
* [[PWY0-1182]], trehalose degradation II (trehalase): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1182 PWY0-1182]
+
 
** '''2''' reactions found over '''2''' reactions in the full pathway
 
** '''2''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-5514]], UDP-N-acetyl-D-galactosamine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5514 PWY-5514]
+
* [[BSUBPOLYAMSYN-PWY]], spermidine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=BSUBPOLYAMSYN-PWY BSUBPOLYAMSYN-PWY]
−
** '''5''' reactions found over '''7''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
−
* [[GLUCOSE1PMETAB-PWY]], glucose and glucose-1-phosphate degradation: [http://metacyc.org/META/NEW-IMAGE?object=GLUCOSE1PMETAB-PWY GLUCOSE1PMETAB-PWY]
+
* [[PWY-6834]], spermidine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6834 PWY-6834]
−
** '''3''' reactions found over '''5''' reactions in the full pathway
+
** '''1''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-621]], sucrose degradation III (sucrose invertase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-621 PWY-621]
+
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
−
* [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose): [http://metacyc.org/META/NEW-IMAGE?object=ANAGLYCOLYSIS-PWY ANAGLYCOLYSIS-PWY]
+
−
** '''10''' reactions found over '''10''' reactions in the full pathway
+
−
* [[PWY-2723]], trehalose degradation V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2723 PWY-2723]
+
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
−
* [[P122-PWY]], heterolactic fermentation: [http://metacyc.org/META/NEW-IMAGE?object=P122-PWY P122-PWY]
+
−
** '''14''' reactions found over '''18''' reactions in the full pathway
+
−
* [[PWY-2722]], trehalose degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2722 PWY-2722]
+
−
** '''1''' reactions found over '''3''' reactions in the full pathway
+
−
* [[PWY-5661]], GDP-glucose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5661 PWY-5661]
+
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
−
** Source: [[orthology-synechocystis]]
+
** Source: [[orthology-athaliana]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
Line 68: Line 40:
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Tool: [[pathwaytools]]
 
−
** Source: [[annotation-experimental_annotation]]
 
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17825 17825]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15981 15981]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01786 R01786]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00178 R00178]
−
** [http://www.genome.jp/dbget-bin/www_bget?R00299 R00299]
+
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P0A6V8 P0A6V8]
+
** [http://www.uniprot.org/uniprot/P82184 P82184]
−
** [http://www.uniprot.org/uniprot/P21908 P21908]
+
** [http://www.uniprot.org/uniprot/P21182 P21182]
−
** [http://www.uniprot.org/uniprot/P64254 P64254]
+
** [http://www.uniprot.org/uniprot/P0A7F6 P0A7F6]
−
** [http://www.uniprot.org/uniprot/Q8XDH5 Q8XDH5]
+
** [http://www.uniprot.org/uniprot/P17707 P17707]
−
** [http://www.uniprot.org/uniprot/Q8XDH4 Q8XDH4]
+
** [http://www.uniprot.org/uniprot/P28918 P28918]
−
** [http://www.uniprot.org/uniprot/Q9CE25 Q9CE25]
+
** [http://www.uniprot.org/uniprot/P17708 P17708]
−
** [http://www.uniprot.org/uniprot/P52792 P52792]
+
** [http://www.uniprot.org/uniprot/P50243 P50243]
−
** [http://www.uniprot.org/uniprot/Q9V2Z6 Q9V2Z6]
+
** [http://www.uniprot.org/uniprot/P46255 P46255]
−
** [http://www.uniprot.org/uniprot/Q7M537 Q7M537]
+
** [http://www.uniprot.org/uniprot/Q04694 Q04694]
−
** [http://www.uniprot.org/uniprot/P17709 P17709]
+
** [http://www.uniprot.org/uniprot/Q42679 Q42679]
−
** [http://www.uniprot.org/uniprot/Q04409 Q04409]
+
** [http://www.uniprot.org/uniprot/Q42829 Q42829]
−
** [http://www.uniprot.org/uniprot/Q92407 Q92407]
+
** [http://www.uniprot.org/uniprot/P79888 P79888]
−
** [http://www.uniprot.org/uniprot/O31392 O31392]
+
** [http://www.uniprot.org/uniprot/O04009 O04009]
 +
** [http://www.uniprot.org/uniprot/O24575 O24575]
 +
** [http://www.uniprot.org/uniprot/Q43820 Q43820]
 +
** [http://www.uniprot.org/uniprot/Q39676 Q39676]
 +
** [http://www.uniprot.org/uniprot/Q39677 Q39677]
 +
** [http://www.uniprot.org/uniprot/O49972 O49972]
 +
** [http://www.uniprot.org/uniprot/O65354 O65354]
 +
** [http://www.uniprot.org/uniprot/O02655 O02655]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=glucokinase}}
+
{{#set: common name=s-adenosylmethionine_decarboxylase_proenzyme}}
−
{{#set: common name=hexokinase}}
+
{{#set: ec number=EC-4.1.1.50}}
−
{{#set: ec number=EC-2.7.1.1}}
+
{{#set: gene associated=Tiso_gene_4269|Tiso_gene_11030}}
−
{{#set: ec number=EC-2.7.1.2}}
+
{{#set: in pathway=ARGSPECAT-PWY|BSUBPOLYAMSYN-PWY|PWY-6834}}
−
{{#set: gene associated=Tiso_gene_3107|Tiso_gene_1303}}
+
−
{{#set: in pathway=PWY-7238|GLYCOCAT-PWY|TREDEGLOW-PWY|P124-PWY|PWY-7385|PWY0-1182|PWY-5514|GLUCOSE1PMETAB-PWY|PWY-621|ANAGLYCOLYSIS-PWY|PWY-2723|P122-PWY|PWY-2722|PWY-5661}}
+
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-synechocystis|orthology-esiliculosus}}
+
{{#set: reconstruction source=orthology-athaliana|annotation-in-silico_annotation|orthology-esiliculosus}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:25, 21 March 2018

Reaction SAMDECARB-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • s-adenosylmethionine_decarboxylase_proenzyme
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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