Difference between revisions of "PHOSPHORIBULOKINASE-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=6.3.5.7-RXN 6.3.5.7-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Glutamyl-tRNA(Gln) amid...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHOSPHORIBULOKINASE-RXN PHOSPHORIBULOKINASE-RXN] == * direction: ** REVERSIBLE * common name: ** ph...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=6.3.5.7-RXN 6.3.5.7-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHOSPHORIBULOKINASE-RXN PHOSPHORIBULOKINASE-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** Glutamyl-tRNA(Gln) amidotransferase subunit A
+
** phosphoribulokinase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/6.3.5.7 EC-6.3.5.7]
+
** [http://enzyme.expasy.org/EC/2.7.1.19 EC-2.7.1.19]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ATP]][c] '''+''' 1 [[GLN]][c] '''+''' 1 [[L-glutamyl-tRNAGln]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[Charged-GLN-tRNAs]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[GLT]][c]
+
** 1 [[RIBULOSE-5P]][c] '''+''' 1 [[ATP]][c] '''<=>''' 1 [[D-RIBULOSE-15-P2]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[ADP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 ATP[c] '''+''' 1 L-glutamine[c] '''+''' 1 an L-glutamyl-[tRNAGln][c] '''+''' 1 H2O[c] '''=>''' 1 H+[c] '''+''' 1 an L-glutaminyl-[tRNAgln][c] '''+''' 1 phosphate[c] '''+''' 1 ADP[c] '''+''' 1 L-glutamate[c]
+
** 1 D-ribulose 5-phosphate[c] '''+''' 1 ATP[c] '''<=>''' 1 D-ribulose-1,5-bisphosphate[c] '''+''' 1 H+[c] '''+''' 1 ADP[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_12219]]
+
* Gene: [[Tiso_gene_17637]]
−
** EXPERIMENTAL_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-esiliculosus]]
 +
** Source: [[orthology-creinhardtii]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5921]], glutaminyl-tRNAgln biosynthesis via transamidation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5921 PWY-5921]
+
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''13''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723]
 +
** '''10''' reactions found over '''10''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-creinhardtii]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-synechocystis]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17521 17521]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19365 19365]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03905 R03905]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01523 R01523]
−
{{#set: direction=LEFT-TO-RIGHT}}
+
* UNIPROT:
−
{{#set: common name=Glutamyl-tRNA(Gln) amidotransferase subunit A}}
+
** [http://www.uniprot.org/uniprot/P23010 P23010]
−
{{#set: ec number=EC-6.3.5.7}}
+
** [http://www.uniprot.org/uniprot/P0AEX5 P0AEX5]
−
{{#set: gene associated=Tiso_gene_12219}}
+
** [http://www.uniprot.org/uniprot/P19923 P19923]
−
{{#set: in pathway=PWY-5921}}
+
** [http://www.uniprot.org/uniprot/P19924 P19924]
−
{{#set: reconstruction category=annotation}}
+
** [http://www.uniprot.org/uniprot/P23015 P23015]
−
{{#set: reconstruction source=annotation-experimental_annotation}}
+
** [http://www.uniprot.org/uniprot/P12033 P12033]
−
{{#set: reconstruction tool=pathwaytools}}
+
** [http://www.uniprot.org/uniprot/Q8GRU9 Q8GRU9]
 +
** [http://www.uniprot.org/uniprot/P09559 P09559]
 +
** [http://www.uniprot.org/uniprot/P25697 P25697]
 +
** [http://www.uniprot.org/uniprot/P93681 P93681]
 +
** [http://www.uniprot.org/uniprot/P19824 P19824]
 +
** [http://www.uniprot.org/uniprot/P27774 P27774]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=phosphoribulokinase}}
 +
{{#set: ec number=EC-2.7.1.19}}
 +
{{#set: gene associated=Tiso_gene_17637}}
 +
{{#set: in pathway=CALVIN-PWY|PWY-5723}}
 +
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:25, 21 March 2018

Reaction PHOSPHORIBULOKINASE-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • phosphoribulokinase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 D-ribulose 5-phosphate[c] + 1 ATP[c] <=> 1 D-ribulose-1,5-bisphosphate[c] + 1 H+[c] + 1 ADP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • CALVIN-PWY, Calvin-Benson-Bassham cycle: CALVIN-PWY
    • 13 reactions found over 13 reactions in the full pathway
  • PWY-5723, Rubisco shunt: PWY-5723
    • 10 reactions found over 10 reactions in the full pathway

Reconstruction information

External links





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