Difference between revisions of "PROTOPORGENOXI-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17783 RXN-17783] == * direction: ** LEFT-TO-RIGHT * common name: ** Acyl-CoA dehydrogenase ** a...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PROTOPORGENOXI-RXN PROTOPORGENOXI-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** protoporp...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17783 RXN-17783] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PROTOPORGENOXI-RXN PROTOPORGENOXI-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Acyl-CoA dehydrogenase
+
** protoporphyrinogen_ix_oxidase_usually_abbreviated
−
** acyl-_dehydrogenase
+
−
** acyl-CoA_dehydrogenase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.3.8 EC-1.3.8]
+
** [http://enzyme.expasy.org/EC/1.3.3.4 EC-1.3.3.4]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ETF-Oxidized]][c] '''+''' 1 [[CPD-15436]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[ETF-Reduced]][c] '''+''' 1 [[CPD0-1162]][c]
+
** 1 [[PROTOPORPHYRINOGEN]][c] '''+''' 3 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[PROTOPORPHYRIN_IX]][c] '''+''' 3 [[HYDROGEN-PEROXIDE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 an oxidized electron-transfer flavoprotein[c] '''+''' 1 (5Z)-tetradecenoyl-CoA[c] '''+''' 1 H+[c] '''=>''' 1 a reduced electron-transfer flavoprotein[c] '''+''' 1 (2E,5Z)-tetradecenoyl-CoA[c]
+
** 1 protoporphyrinogen IX[c] '''+''' 3 oxygen[c] '''=>''' 1 protoporphyrin IX[c] '''+''' 3 hydrogen peroxide[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_8271]]
+
* Gene: [[Tiso_gene_11986]]
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** IN-SILICO_ANNOTATION
+
** Source: [[orthology-synechocystis]]
−
***AUTOMATED-NAME-MATCH
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* Gene: [[Tiso_gene_15401]]
−
* [[Tiso_gene_5449]]
+
** Source: [[annotation-in-silico_annotation]]
−
** IN-SILICO_ANNOTATION
+
*** Assignment: EC-NUMBER
−
***AUTOMATED-NAME-MATCH
+
** Source: [[annotation-experimental_annotation]]
−
* [[Tiso_gene_8272]]
+
*** Assignment: EC-NUMBER
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-athaliana]]
−
***AUTOMATED-NAME-MATCH
+
** Source: [[orthology-esiliculosus]]
−
* [[Tiso_gene_6475]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_16631]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_16113]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY0-1415]], superpathway of heme biosynthesis from uroporphyrinogen-III: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1415 PWY0-1415]
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 +
* [[HEME-BIOSYNTHESIS-II]], heme biosynthesis I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEME-BIOSYNTHESIS-II HEME-BIOSYNTHESIS-II]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): [http://metacyc.org/META/NEW-IMAGE?object=CHLOROPHYLL-SYN CHLOROPHYLL-SYN]
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7159 PWY-7159]
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-synechocystis]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25576 25576]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R03222 R03222]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P50336 P50336]
 +
** [http://www.uniprot.org/uniprot/Q49404 Q49404]
 +
** [http://www.uniprot.org/uniprot/Q9CHX0 Q9CHX0]
 +
** [http://www.uniprot.org/uniprot/P0ACB4 P0ACB4]
 +
** [http://www.uniprot.org/uniprot/Q7M1R6 Q7M1R6]
 +
** [http://www.uniprot.org/uniprot/P51175 P51175]
 +
** [http://www.uniprot.org/uniprot/O24163 O24163]
 +
** [http://www.uniprot.org/uniprot/O24164 O24164]
 +
** [http://www.uniprot.org/uniprot/O64384 O64384]
 +
** [http://www.uniprot.org/uniprot/O64385 O64385]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Acyl-CoA dehydrogenase}}
+
{{#set: common name=protoporphyrinogen_ix_oxidase_usually_abbreviated}}
−
{{#set: common name=acyl-_dehydrogenase}}
+
{{#set: ec number=EC-1.3.3.4}}
−
{{#set: common name=acyl-CoA_dehydrogenase}}
+
{{#set: gene associated=Tiso_gene_11986|Tiso_gene_15401}}
−
{{#set: ec number=EC-1.3.8}}
+
{{#set: in pathway=PWY0-1415|HEME-BIOSYNTHESIS-II|CHLOROPHYLL-SYN|PWY-7159}}
−
{{#set: gene associated=Tiso_gene_8271|Tiso_gene_5449|Tiso_gene_8272|Tiso_gene_6475|Tiso_gene_16631|Tiso_gene_16113}}
+
{{#set: reconstruction category=orthology|manual|annotation}}
−
{{#set: in pathway=}}
+
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction source=annotation-in-silico_annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+

Latest revision as of 20:25, 21 March 2018

Reaction PROTOPORGENOXI-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • protoporphyrinogen_ix_oxidase_usually_abbreviated
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY0-1415, superpathway of heme biosynthesis from uroporphyrinogen-III: PWY0-1415
    • 5 reactions found over 6 reactions in the full pathway
  • HEME-BIOSYNTHESIS-II, heme biosynthesis I (aerobic): HEME-BIOSYNTHESIS-II
    • 4 reactions found over 4 reactions in the full pathway
  • CHLOROPHYLL-SYN, 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): CHLOROPHYLL-SYN
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-7159, 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): PWY-7159
    • 8 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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