Difference between revisions of "RXN-9527"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PRPPAMIDOTRANS-RXN PRPPAMIDOTRANS-RXN] == * direction: ** REVERSIBLE * common name: ** ORF ** short...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9527 RXN-9527] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-oxo-decanoyl-[acyl-carrier...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PRPPAMIDOTRANS-RXN PRPPAMIDOTRANS-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9527 RXN-9527] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** ORF
+
** 3-oxo-decanoyl-[acyl-carrier protein] synthase
−
** short-chain_dehydrogenase_reductase
+
** 3-oxoacyl-synthase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.4.2.14 EC-2.4.2.14]
+
** [http://enzyme.expasy.org/EC/2.3.1.41 EC-2.3.1.41]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[GLT]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[5-P-BETA-D-RIBOSYL-AMINE]][c] '''<=>''' 1 [[PRPP]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[GLN]][c]
+
** 1 [[Octanoyl-ACPs]][c] '''+''' 1 [[MALONYL-ACP]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[ACP]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[3-oxo-decanoyl-ACPs]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 L-glutamate[c] '''+''' 1 diphosphate[c] '''+''' 1 5-phospho-&beta;-D-ribosylamine[c] '''<=>''' 1 5-phospho-&alpha;-D-ribose 1-diphosphate[c] '''+''' 1 H2O[c] '''+''' 1 L-glutamine[c]
+
** 1 an octanoyl-[acp][c] '''+''' 1 a malonyl-[acp][c] '''+''' 1 H+[c] '''=>''' 1 a holo-[acyl-carrier protein][c] '''+''' 1 CO2[c] '''+''' 1 a 3-oxo-decanoyl-[acp][c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Tiso_gene_1007]]
+
* Gene: [[Tiso_gene_15991]]
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_5939]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[Tiso_gene_9914]]
+
* Gene: [[Tiso_gene_19302]]
−
** Source: [[annotation-in-silico_annotation]]
+
** Source: [[orthology-synechocystis]]
−
*** Assignment: EC-NUMBER
+
** Source: [[orthology-esiliculosus]]
−
** Source: [[orthology-athaliana]]
+
* Gene: [[Tiso_gene_14485]]
 
** Source: [[orthology-synechocystis]]
 
** Source: [[orthology-synechocystis]]
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
−
** Source: [[orthology-creinhardtii]]
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6121]], 5-aminoimidazole ribonucleotide biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6121 PWY-6121]
+
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''31''' reactions found over '''31''' reactions in the full pathway
−
* [[PWY-6122]], 5-aminoimidazole ribonucleotide biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6122 PWY-6122]
+
−
** '''4''' reactions found over '''5''' reactions in the full pathway
+
−
* [[PWY-7282]], 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7282 PWY-7282]
+
−
** '''6''' reactions found over '''9''' reactions in the full pathway
+
−
* [[PWY-6277]], superpathway of 5-aminoimidazole ribonucleotide biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6277 PWY-6277]
+
−
** '''6''' reactions found over '''9''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 
** Source: [[orthology-athaliana]]
 
** Source: [[orthology-athaliana]]
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-creinhardtii]]
 
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
** Source: [[orthology-synechocystis]]
 
** Source: [[orthology-synechocystis]]
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*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14905 14905]
+
{{#set: common name=3-oxo-decanoyl-[acyl-carrier protein] synthase}}
−
* LIGAND-RXN:
+
{{#set: common name=3-oxoacyl-synthase}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R01072 R01072]
+
{{#set: ec number=EC-2.3.1.41}}
−
* UNIPROT:
+
{{#set: gene associated=Tiso_gene_15991|Tiso_gene_5939|Tiso_gene_19302|Tiso_gene_14485}}
−
** [http://www.uniprot.org/uniprot/P28173 P28173]
+
{{#set: in pathway=PWY-5971}}
−
** [http://www.uniprot.org/uniprot/P35433 P35433]
+
−
** [http://www.uniprot.org/uniprot/Q06203 Q06203]
+
−
** [http://www.uniprot.org/uniprot/O29388 O29388]
+
−
** [http://www.uniprot.org/uniprot/O67236 O67236]
+
−
** [http://www.uniprot.org/uniprot/P65829 P65829]
+
−
** [http://www.uniprot.org/uniprot/O57979 O57979]
+
−
** [http://www.uniprot.org/uniprot/Q9X0X4 Q9X0X4]
+
−
** [http://www.uniprot.org/uniprot/Q9RXT6 Q9RXT6]
+
−
** [http://www.uniprot.org/uniprot/Q9K0C4 Q9K0C4]
+
−
** [http://www.uniprot.org/uniprot/Q9V253 Q9V253]
+
−
** [http://www.uniprot.org/uniprot/Q9PIT3 Q9PIT3]
+
−
** [http://www.uniprot.org/uniprot/Q57657 Q57657]
+
−
** [http://www.uniprot.org/uniprot/Q9JVC9 Q9JVC9]
+
−
** [http://www.uniprot.org/uniprot/O26742 O26742]
+
−
** [http://www.uniprot.org/uniprot/P43854 P43854]
+
−
** [http://www.uniprot.org/uniprot/P35853 P35853]
+
−
** [http://www.uniprot.org/uniprot/P41390 P41390]
+
−
** [http://www.uniprot.org/uniprot/Q27601 Q27601]
+
−
** [http://www.uniprot.org/uniprot/Q38999 Q38999]
+
−
** [http://www.uniprot.org/uniprot/P04046 P04046]
+
−
** [http://www.uniprot.org/uniprot/Q55621 Q55621]
+
−
** [http://www.uniprot.org/uniprot/Q55038 Q55038]
+
−
** [http://www.uniprot.org/uniprot/Q9STG9 Q9STG9]
+
−
** [http://www.uniprot.org/uniprot/Q9T0J5 Q9T0J5]
+
−
** [http://www.uniprot.org/uniprot/P52418 P52418]
+
−
** [http://www.uniprot.org/uniprot/P52419 P52419]
+
−
** [http://www.uniprot.org/uniprot/Q22134 Q22134]
+
−
** [http://www.uniprot.org/uniprot/Q9ZB05 Q9ZB05]
+
−
** [http://www.uniprot.org/uniprot/P00497 P00497]
+
−
** [http://www.uniprot.org/uniprot/P0AG16 P0AG16]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=ORF}}
+
−
{{#set: common name=short-chain_dehydrogenase_reductase}}
+
−
{{#set: ec number=EC-2.4.2.14}}
+
−
{{#set: gene associated=Tiso_gene_1007|Tiso_gene_9914}}
+
−
{{#set: in pathway=PWY-6121|PWY-6122|PWY-7282|PWY-6277}}
+
 
{{#set: reconstruction category=orthology|manual|annotation}}
 
{{#set: reconstruction category=orthology|manual|annotation}}
−
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
+
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:05, 21 March 2018

Reaction RXN-9527

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 3-oxo-decanoyl-[acyl-carrier protein] synthase
    • 3-oxoacyl-synthase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5971, palmitate biosynthesis II (bacteria and plants): PWY-5971
    • 31 reactions found over 31 reactions in the full pathway

Reconstruction information

External links

"3-oxo-decanoyl-[acyl-carrier protein] synthase" cannot be used as a page name in this wiki.




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