Difference between revisions of "1.6.5.4-RXN"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY3O-355 PWY3O-355] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.6.5.4-RXN 1.6.5.4-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY3O-355 PWY3O-355] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.6.5.4-RXN 1.6.5.4-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
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** LEFT-TO-RIGHT
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* common name:
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* ec number:
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** stearate biosynthesis III (fungi)
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** [http://enzyme.expasy.org/EC/1.6.5.4 EC-1.6.5.4]
 
* Synonym(s):
 
* Synonym(s):
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** fatty acid biosynthesis
 
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** stearic acid biosynthesis
 
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** octadecanoate biosynthesis
 
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** saturated fatty acid biosynthesis
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''6''' reactions found over '''6''' reactions in the full pathway
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* With identifiers:
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* [[RXN-9624]]
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** 1 [[NADH]][c] '''+''' 2 [[CPD-318]][c] '''=>''' 2 [[ASCORBATE]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[PROTON]][c]
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** 2 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_7477]]
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** 1 NADH[c] '''+''' 2 monodehydroascorbate radical[c] '''=>''' 2 L-ascorbate[c] '''+''' 1 NAD+[c] '''+''' 1 H+[c]
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*** [[Tiso_gene_801]]
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** 3 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-in-silico_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-athaliana]]
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* Gene: [[Tiso_gene_2478]]
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*** [[orthology-creinhardtii]]
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** Source: [[orthology-athaliana]]
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* [[RXN-9633]]
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** Source: [[orthology-athaliana]]
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** 7 associated gene(s):
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== Pathways  ==
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*** [[Tiso_gene_10876]]
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* [[PWY-6370]], ascorbate recycling (cytosolic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6370 PWY-6370]
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*** [[Tiso_gene_9885]]
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** '''3''' reactions found over '''6''' reactions in the full pathway
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*** [[Tiso_gene_136]]
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== Reconstruction information  ==
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*** [[Tiso_gene_135]]
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* Category: [[orthology]]
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*** [[Tiso_gene_500]]
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** Source: [[orthology-athaliana]]
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*** [[Tiso_gene_13394]]
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*** Tool: [[pantograph]]
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*** [[Tiso_gene_13083]]
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** 4 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[manual-primary_network]]
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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* [[RXN-9634]]
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** 6 associated gene(s):
+
−
*** [[Tiso_gene_10876]]
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*** [[Tiso_gene_500]]
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−
*** [[Tiso_gene_136]]
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−
*** [[Tiso_gene_135]]
+
−
*** [[Tiso_gene_13394]]
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−
*** [[Tiso_gene_6884]]
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−
** 3 reconstruction source(s) associated:
+
−
*** [[annotation-experimental_annotation]]
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−
*** [[manual-primary_network]]
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−
*** [[annotation-in-silico_annotation]]
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−
* [[RXN3O-1803]]
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−
** 9 associated gene(s):
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−
*** [[Tiso_gene_135]]
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−
*** [[Tiso_gene_5939]]
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−
*** [[Tiso_gene_13394]]
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−
*** [[Tiso_gene_14485]]
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−
*** [[Tiso_gene_19302]]
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*** [[Tiso_gene_500]]
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−
*** [[Tiso_gene_10876]]
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*** [[Tiso_gene_136]]
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*** [[Tiso_gene_15991]]
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** 6 reconstruction source(s) associated:
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−
*** [[annotation-experimental_annotation]]
+
−
*** [[orthology-esiliculosus]]
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−
*** [[annotation-in-silico_annotation]]
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−
*** [[orthology-athaliana]]
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−
*** [[orthology-synechocystis]]
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−
*** [[manual-primary_network]]
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* [[RXN3O-5293]]
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** 5 associated gene(s):
+
−
*** [[Tiso_gene_10876]]
+
−
*** [[Tiso_gene_136]]
+
−
*** [[Tiso_gene_135]]
+
−
*** [[Tiso_gene_13394]]
+
−
*** [[Tiso_gene_500]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[annotation-in-silico_annotation]]
+
−
* [[RXN3O-5304]]
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−
** 5 associated gene(s):
+
−
*** [[Tiso_gene_500]]
+
−
*** [[Tiso_gene_135]]
+
−
*** [[Tiso_gene_13394]]
+
−
*** [[Tiso_gene_136]]
+
−
*** [[Tiso_gene_10876]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[annotation-in-silico_annotation]]
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−
== Reaction(s) not found ==
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== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-4751}}
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* RHEA:
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{{#set: common name=stearate biosynthesis III (fungi)}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14581 14581]
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{{#set: common name=fatty acid biosynthesis|stearic acid biosynthesis|octadecanoate biosynthesis|saturated fatty acid biosynthesis}}
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* LIGAND-RXN:
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{{#set: reaction found=6}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00095 R00095]
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{{#set: total reaction=6}}
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* UNIPROT:
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{{#set: completion rate=100.0}}
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** [http://www.uniprot.org/uniprot/Q9S926 Q9S926]
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** [http://www.uniprot.org/uniprot/Q40977 Q40977]
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** [http://www.uniprot.org/uniprot/Q42711 Q42711]
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** [http://www.uniprot.org/uniprot/Q43497 Q43497]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: ec number=EC-1.6.5.4}}
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{{#set: gene associated=Tiso_gene_2478}}
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{{#set: in pathway=PWY-6370}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-athaliana}}
 +
{{#set: reconstruction tool=pantograph}}

Latest revision as of 19:12, 21 March 2018

Reaction 1.6.5.4-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 NADH[c] + 2 monodehydroascorbate radical[c] => 2 L-ascorbate[c] + 1 NAD+[c] + 1 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6370, ascorbate recycling (cytosolic): PWY-6370
    • 3 reactions found over 6 reactions in the full pathway

Reconstruction information

External links




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