Difference between revisions of "1.21.3.1-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=THREDEHYD-RXN THREDEHYD-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** threonine_mitochond...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.21.3.1-RXN 1.21.3.1-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.o...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=THREDEHYD-RXN THREDEHYD-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.21.3.1-RXN 1.21.3.1-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** threonine_mitochondrial
 
−
** ORF
 
−
** serine_racemase
 
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/4.3.1.19 EC-4.3.1.19]
+
** [http://enzyme.expasy.org/EC/1.21.3.1 EC-1.21.3.1]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[THR]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[2-OXOBUTANOATE]][c]
+
** 1 [[N-5S-5-AMINO-5-CARBOXYPENTANOYL-L-CY]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[ISOPENICILLIN-N]][c] '''+''' 2 [[WATER]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 L-threonine[c] '''=>''' 1 ammonium[c] '''+''' 1 2-oxobutanoate[c]
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** 1 N-[(5S)-5-amino-5-carboxypentanoyl]-L-cysteinyl-D-valine[c] '''+''' 1 oxygen[c] '''=>''' 1 isopenicillin N[c] '''+''' 2 H2O[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Tiso_gene_12535]]
+
* Gene: [[Tiso_gene_3330]]
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
** Source: [[orthology-athaliana]]
+
−
** Source: [[orthology-synechocystis]]
+
−
** Source: [[orthology-esiliculosus]]
+
−
** Source: [[orthology-creinhardtii]]
+
−
* Gene: [[Tiso_gene_17207]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Tiso_gene_8525]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY66-428]], L-threonine degradation V: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-428 PWY66-428]
+
* [[PWY-5629]], isopenicillin N biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5629 PWY-5629]
 
** '''1''' reactions found over '''2''' reactions in the full pathway
 
** '''1''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
−
** Source: [[orthology-athaliana]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-creinhardtii]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-synechocystis]]
 
−
*** Tool: [[pantograph]]
 
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
−
* Category: [[manual]]
 
−
** Source: [[manual-primary_network]]
 
−
* Category: [[annotation]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22108 22108]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22428 22428]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00996 R00996]
+
** [http://www.genome.jp/dbget-bin/www_bget?R04872 R04872]
−
* UNIPROT:
+
−
** [http://www.uniprot.org/uniprot/P25306 P25306]
+
−
** [http://www.uniprot.org/uniprot/Q04513 Q04513]
+
−
** [http://www.uniprot.org/uniprot/P37946 P37946]
+
−
** [http://www.uniprot.org/uniprot/Q9JZW1 Q9JZW1]
+
−
** [http://www.uniprot.org/uniprot/Q02145 Q02145]
+
−
** [http://www.uniprot.org/uniprot/P66897 P66897]
+
−
** [http://www.uniprot.org/uniprot/Q9WYJ1 Q9WYJ1]
+
−
** [http://www.uniprot.org/uniprot/Q9PP95 Q9PP95]
+
−
** [http://www.uniprot.org/uniprot/P25379 P25379]
+
−
** [http://www.uniprot.org/uniprot/P00927 P00927]
+
−
** [http://www.uniprot.org/uniprot/P20506 P20506]
+
−
** [http://www.uniprot.org/uniprot/P0AGF6 P0AGF6]
+
−
** [http://www.uniprot.org/uniprot/P04968 P04968]
+
−
** [http://www.uniprot.org/uniprot/P20132 P20132]
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−
** [http://www.uniprot.org/uniprot/P09367 P09367]
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−
** [http://www.uniprot.org/uniprot/Q9RWU8 Q9RWU8]
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−
** [http://www.uniprot.org/uniprot/Q9JUX5 Q9JUX5]
+
−
** [http://www.uniprot.org/uniprot/Q9ZD93 Q9ZD93]
+
−
** [http://www.uniprot.org/uniprot/P31212 P31212]
+
−
** [http://www.uniprot.org/uniprot/P36007 P36007]
+
−
** [http://www.uniprot.org/uniprot/P73375 P73375]
+
−
** [http://www.uniprot.org/uniprot/Q9T0D1 Q9T0D1]
+
−
** [http://www.uniprot.org/uniprot/Q39469 Q39469]
+
−
** [http://www.uniprot.org/uniprot/Q93968 Q93968]
+
−
** [http://www.uniprot.org/uniprot/Q9XAA4 Q9XAA4]
+
−
** [http://www.uniprot.org/uniprot/O94634 O94634]
+
−
** [http://www.uniprot.org/uniprot/O59791 O59791]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=threonine_mitochondrial}}
+
{{#set: ec number=EC-1.21.3.1}}
−
{{#set: common name=ORF}}
+
{{#set: gene associated=Tiso_gene_3330}}
−
{{#set: common name=serine_racemase}}
+
{{#set: in pathway=PWY-5629}}
−
{{#set: ec number=EC-4.3.1.19}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: gene associated=Tiso_gene_12535|Tiso_gene_17207|Tiso_gene_8525}}
+
{{#set: reconstruction source=orthology-esiliculosus}}
−
{{#set: in pathway=PWY66-428}}
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction category=orthology|manual|annotation}}
+
−
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 19:13, 21 March 2018

Reaction 1.21.3.1-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5629, isopenicillin N biosynthesis: PWY-5629
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links




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