Difference between revisions of "RXN3DJ-11230"

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(Created page with "Category:Gene == Gene Tiso_gene_13305 == * right end position: ** 6380 * transcription direction: ** NEGATIVE * left end position: ** 3486 * centisome position: ** 54.5710...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN3DJ-11230 RXN3DJ-11230] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.o...")
 
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[[Category:Gene]]
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[[Category:Reaction]]
== Gene Tiso_gene_13305 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN3DJ-11230 RXN3DJ-11230] ==
* right end position:
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* direction:
** 6380
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** LEFT-TO-RIGHT
* transcription direction:
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* ec number:
** NEGATIVE
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** [http://enzyme.expasy.org/EC/4.3.2 EC-4.3.2]
* left end position:
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** 3486
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* centisome position:
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** 54.571068   
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* Synonym(s):
 
* Synonym(s):
  
== Reactions associated ==
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== Reaction Formula ==
* Reaction: [[3.2.1.21-RXN]]
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* With identifiers:
** Source: [[annotation-in-silico_annotation]]
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** 1 [[CPD3DJ-11366]][c] '''=>''' 1 [[PHOSPHORYL-ETHANOLAMINE]][c] '''+''' 1 [[CPD-292]][c]
*** Assignment: ec-number
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* With common name(s):
** Source: [[annotation-experimental_annotation]]
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** 1 sphingosine 1-phosphate[c] '''=>''' 1 O-phosphoethanolamine[c] '''+''' 1 (2E)-hexadecenal[c]
*** Assignment: ec-number
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* Reaction: [[RXN-10769]]
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== Genes associated with this reaction  ==
** Source: [[annotation-in-silico_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
*** Assignment: ec-number
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* Gene: [[Tiso_gene_105]]
** Source: [[annotation-experimental_annotation]]
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** Source: [[orthology-athaliana]]
*** Assignment: ec-number
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** Source: [[orthology-esiliculosus]]
* Reaction: [[RXN-10773]]
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== Pathways  ==
** Source: [[annotation-in-silico_annotation]]
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* [[PWY3DJ-11470]], sphingosine and sphingosine-1-phosphate metabolism: [http://metacyc.org/META/NEW-IMAGE?object=PWY3DJ-11470 PWY3DJ-11470]
*** Assignment: ec-number
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** '''3''' reactions found over '''5''' reactions in the full pathway
** Source: [[annotation-experimental_annotation]]
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== Reconstruction information  ==
*** Assignment: ec-number
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* Category: [[orthology]]
* Reaction: [[RXN-13602]]
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** Source: [[orthology-athaliana]]
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pantograph]]
*** Assignment: ec-number
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** Source: [[orthology-esiliculosus]]
** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pantograph]]
*** Assignment: ec-number
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* Reaction: [[RXN-13603]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-14179]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-5341]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-8036]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-9674]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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== Pathways associated ==
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* [[PWY-3121]]
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* [[PWY-6002]]
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* [[PWY-6788]]
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* [[PWY-5176]]
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* [[PWY-7092]]
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* [[PWY-7091]]
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== External links  ==
 
== External links  ==
{{#set: right end position=6380}}
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* RHEA:
{{#set: transcription direction=NEGATIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=33508 33508]
{{#set: left end position=3486}}
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* LIGAND-RXN:
{{#set: centisome position=54.571068    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R06516 R06516]
{{#set: reaction associated=3.2.1.21-RXN|RXN-10769|RXN-10773|RXN-13602|RXN-13603|RXN-14179|RXN-5341|RXN-8036|RXN-9674}}
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{{#set: direction=LEFT-TO-RIGHT}}
{{#set: pathway associated=PWY-3121|PWY-6002|PWY-6788|PWY-5176|PWY-7092|PWY-7091}}
+
{{#set: ec number=EC-4.3.2}}
 +
{{#set: gene associated=Tiso_gene_105}}
 +
{{#set: in pathway=PWY3DJ-11470}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-athaliana|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph}}

Latest revision as of 19:15, 21 March 2018

Reaction RXN3DJ-11230

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY3DJ-11470, sphingosine and sphingosine-1-phosphate metabolism: PWY3DJ-11470
    • 3 reactions found over 5 reactions in the full pathway

Reconstruction information

External links