Difference between revisions of "URIDINE"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=P341-PWY P341-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-21...")
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=URIDINE URIDINE] == * smiles: ** C(O)C1(OC(C(O)C(O)1)N2(C=CC(=O)NC(=O)2)) * common name: ** uri...")
 
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[[Category:Pathway]]
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[[Category:Metabolite]]
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=P341-PWY P341-PWY] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=URIDINE URIDINE] ==
* taxonomic range:
+
* smiles:
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
+
** C(O)C1(OC(C(O)C(O)1)N2(C=CC(=O)NC(=O)2))
 
* common name:
 
* common name:
** glycolysis V (Pyrococcus)
+
** uridine
 +
* inchi key:
 +
** InChIKey=DRTQHJPVMGBUCF-XVFCMESISA-N
 +
* molecular weight:
 +
** 244.204   
 
* Synonym(s):
 
* Synonym(s):
** archaeal Embden-Meyerhof pathway
 
** archaeal Embden-Meyerhof-Parnas pathway
 
** archaeal EMP pathway
 
  
== Reaction(s) found ==
+
== Reaction(s) known to consume the compound ==
'''6''' reactions found over '''9''' reactions in the full pathway
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* [[GTUP]]
* [[2PGADEHYDRAT-RXN]]
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* [[AUPT]]
** 4 associated gene(s):
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* [[UTUP]]
*** [[Tiso_gene_8720]]
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* [[URIDINE-NUCLEOSIDASE-RXN]]
*** [[Tiso_gene_14718]]
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* [[DGTUP]]
*** [[Tiso_gene_5619]]
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* [[DUTUP]]
*** [[Tiso_gene_13317]]
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* [[DCTUP]]
** 7 reconstruction source(s) associated:
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* [[DATUP]]
*** [[annotation-experimental_annotation]]
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* [[DTTUP]]
*** [[orthology-esiliculosus]]
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* [[ITUP]]
*** [[annotation-in-silico_annotation]]
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* [[URIDINEKIN-RXN]]
*** [[orthology-athaliana]]
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== Reaction(s) known to produce the compound ==
*** [[orthology-synechocystis]]
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* [[CYTIDEAM2-RXN]]
*** [[manual-primary_network]]
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* [[RXN-14025]]
*** [[orthology-creinhardtii]]
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* [[UMPP]]
* [[3PGAREARR-RXN]]
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== Reaction(s) of unknown directionality ==
** 16 associated gene(s):
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* [[URKI-RXN]]
*** [[Tiso_gene_15048]]
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* [[URPHOS-RXN]]
*** [[Tiso_gene_7201]]
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*** [[Tiso_gene_9922]]
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*** [[Tiso_gene_2841]]
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*** [[Tiso_gene_14530]]
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*** [[Tiso_gene_16754]]
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*** [[Tiso_gene_2365]]
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*** [[Tiso_gene_16271]]
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*** [[Tiso_gene_5468]]
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*** [[Tiso_gene_20311]]
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*** [[Tiso_gene_14664]]
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*** [[Tiso_gene_15391]]
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*** [[Tiso_gene_14212]]
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*** [[Tiso_gene_10516]]
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*** [[Tiso_gene_9923]]
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*** [[Tiso_gene_2667]]
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** 7 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
+
*** [[orthology-esiliculosus]]
+
*** [[annotation-in-silico_annotation]]
+
*** [[orthology-athaliana]]
+
*** [[orthology-synechocystis]]
+
*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[F16ALDOLASE-RXN]]
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** 6 associated gene(s):
+
*** [[Tiso_gene_12272]]
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*** [[Tiso_gene_65]]
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*** [[Tiso_gene_9119]]
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*** [[Tiso_gene_14568]]
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*** [[Tiso_gene_9179]]
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*** [[Tiso_gene_9118]]
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** 5 reconstruction source(s) associated:
+
*** [[annotation-in-silico_annotation]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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*** [[orthology-esiliculosus]]
+
*** [[annotation-experimental_annotation]]
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* [[PEPDEPHOS-RXN]]
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** 4 associated gene(s):
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*** [[Tiso_gene_18206]]
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*** [[Tiso_gene_14504]]
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*** [[Tiso_gene_974]]
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*** [[Tiso_gene_14505]]
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** 7 reconstruction source(s) associated:
+
*** [[annotation-experimental_annotation]]
+
*** [[orthology-esiliculosus]]
+
*** [[annotation-in-silico_annotation]]
+
*** [[orthology-athaliana]]
+
*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[PGLUCISOM-RXN]]
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** 1 associated gene(s):
+
*** [[Tiso_gene_19480]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
+
*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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* [[TRIOSEPISOMERIZATION-RXN]]
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** 4 associated gene(s):
+
*** [[Tiso_gene_19961]]
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*** [[Tiso_gene_20000]]
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*** [[Tiso_gene_19962]]
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*** [[Tiso_gene_10646]]
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** 7 reconstruction source(s) associated:
+
*** [[annotation-experimental_annotation]]
+
*** [[orthology-esiliculosus]]
+
*** [[annotation-in-silico_annotation]]
+
*** [[orthology-athaliana]]
+
*** [[orthology-synechocystis]]
+
*** [[manual-primary_network]]
+
*** [[orthology-creinhardtii]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=1.2.7.6-RXN 1.2.7.6-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=R302-RXN R302-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-17001 RXN-17001]
+
 
== External links  ==
 
== External links  ==
{{#set: taxonomic range=TAX-2157}}
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* CAS : 58-96-8
{{#set: common name=glycolysis V (Pyrococcus)}}
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* BIGG : uri
{{#set: common name=archaeal Embden-Meyerhof pathway|archaeal Embden-Meyerhof-Parnas pathway|archaeal EMP pathway}}
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* DRUGBANK : DB02745
{{#set: reaction found=6}}
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* PUBCHEM:
{{#set: total reaction=9}}
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=6029 6029]
{{#set: completion rate=67.0}}
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* HMDB : HMDB00296
 +
* LIGAND-CPD:
 +
** [http://www.genome.jp/dbget-bin/www_bget?C00299 C00299]
 +
* CHEMSPIDER:
 +
** [http://www.chemspider.com/Chemical-Structure.5807.html 5807]
 +
* CHEBI:
 +
** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=16704 16704]
 +
* METABOLIGHTS : MTBLC16704
 +
{{#set: smiles=C(O)C1(OC(C(O)C(O)1)N2(C=CC(=O)NC(=O)2))}}
 +
{{#set: common name=uridine}}
 +
{{#set: inchi key=InChIKey=DRTQHJPVMGBUCF-XVFCMESISA-N}}
 +
{{#set: molecular weight=244.204    }}
 +
{{#set: consumed by=GTUP|AUPT|UTUP|URIDINE-NUCLEOSIDASE-RXN|DGTUP|DUTUP|DCTUP|DATUP|DTTUP|ITUP|URIDINEKIN-RXN}}
 +
{{#set: produced by=CYTIDEAM2-RXN|RXN-14025|UMPP}}
 +
{{#set: reversible reaction associated=URKI-RXN|URPHOS-RXN}}

Latest revision as of 19:15, 21 March 2018

Metabolite URIDINE

  • smiles:
    • C(O)C1(OC(C(O)C(O)1)N2(C=CC(=O)NC(=O)2))
  • common name:
    • uridine
  • inchi key:
    • InChIKey=DRTQHJPVMGBUCF-XVFCMESISA-N
  • molecular weight:
    • 244.204
  • Synonym(s):

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

  • CAS : 58-96-8
  • BIGG : uri
  • DRUGBANK : DB02745
  • PUBCHEM:
  • HMDB : HMDB00296
  • LIGAND-CPD:
  • CHEMSPIDER:
  • CHEBI:
  • METABOLIGHTS : MTBLC16704