Difference between revisions of "PWY-5070"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8991 RXN-8991] == * direction: ** REVERSIBLE * common name: ** 3-isopropylmalate dehydratase **...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5070 PWY-5070] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-3...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8991 RXN-8991] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5070 PWY-5070] ==
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* direction:
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* taxonomic range:
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** REVERSIBLE
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
 
* common name:
 
* common name:
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** 3-isopropylmalate dehydratase
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** gibberellin biosynthesis I (non C-3, non C-13 hydroxylation)
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** ORF
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* Synonym(s):
 
* Synonym(s):
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** (2R,3S)-3-isopropylmalate hydro-lyase
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** gibberellin biosynthesis I (late C-3 hydroxylation)
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** β-isopropylmalate dehydratase
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** gibberellin biosynthesis I (late C-13 hydroxylation)
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** α-isopropylmalate isomerase
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** 3-isopropylmalate hydro-lyase
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''3''' reactions found over '''7''' reactions in the full pathway
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** 1 [[2-D-THREO-HYDROXY-3-CARBOXY-ISOCAPROATE]][c] '''<=>''' 1 [[WATER]][c] '''+''' 1 [[CPD-9451]][c]
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* [[RXN1F-162]]
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* With common name(s):
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** 1 associated gene(s):
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** 1 (2R,3S)-3-isopropylmalate[c] '''<=>''' 1 H2O[c] '''+''' 1 2-isopropylmaleate[c]
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*** [[Tiso_gene_3330]]
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** 2 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[orthology-athaliana]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_12778]]
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* [[RXN1F-163]]
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** Source: [[annotation-in-silico_annotation]]
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** 1 associated gene(s):
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*** Assignment: EC-NUMBER
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*** [[Tiso_gene_3330]]
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** Source: [[annotation-experimental_annotation]]
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** 2 reconstruction source(s) associated:
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*** Assignment: EC-NUMBER
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*** [[orthology-athaliana]]
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** Source: [[orthology-athaliana]]
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*** [[orthology-esiliculosus]]
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** Source: [[orthology-esiliculosus]]
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* [[RXN1F-165]]
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== Pathways  ==
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** 1 associated gene(s):
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* [[LEUSYN-PWY]], L-leucine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=LEUSYN-PWY LEUSYN-PWY]
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*** [[Tiso_gene_3330]]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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** 2 reconstruction source(s) associated:
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* [[PWY-6871]], 3-methylbutanol biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6871 PWY-6871]
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*** [[orthology-athaliana]]
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** '''6''' reactions found over '''7''' reactions in the full pathway
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*** [[orthology-esiliculosus]]
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== Reconstruction information  ==
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== Reaction(s) not found ==
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* Category: [[orthology]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-6523 RXN-6523]
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** Source: [[orthology-athaliana]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-6541 RXN-6541]
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*** Tool: [[pantograph]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-164 RXN1F-164]
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** Source: [[orthology-esiliculosus]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-99 RXN1F-99]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* ARACYC:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10676 10676]
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** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY-5070 PWY-5070]
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-33090}}
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** [http://www.genome.jp/dbget-bin/www_bget?R04001 R04001]
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{{#set: common name=gibberellin biosynthesis I (non C-3, non C-13 hydroxylation)}}
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=gibberellin biosynthesis I (late C-3 hydroxylation)|gibberellin biosynthesis I (late C-13 hydroxylation)}}
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{{#set: common name=3-isopropylmalate dehydratase}}
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{{#set: reaction found=3}}
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{{#set: common name=ORF}}
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{{#set: total reaction=7}}
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{{#set: common name=(2R,3S)-3-isopropylmalate hydro-lyase|&beta;-isopropylmalate dehydratase|&alpha;-isopropylmalate isomerase|3-isopropylmalate hydro-lyase}}
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{{#set: completion rate=43.0}}
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{{#set: gene associated=Tiso_gene_12778}}
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{{#set: in pathway=LEUSYN-PWY|PWY-6871}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-athaliana|annotation-experimental_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 20:16, 21 March 2018

Pathway PWY-5070

  • taxonomic range:
  • common name:
    • gibberellin biosynthesis I (non C-3, non C-13 hydroxylation)
  • Synonym(s):
    • gibberellin biosynthesis I (late C-3 hydroxylation)
    • gibberellin biosynthesis I (late C-13 hydroxylation)

Reaction(s) found

3 reactions found over 7 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-5070&oldid=40511"