Difference between revisions of "RXN-12579"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACYLCOASYN-RXN ACYLCOASYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** 2,3,4-saturated f...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12579 RXN-12579] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** zinc_finger_fyve_dom...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACYLCOASYN-RXN ACYLCOASYN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12579 RXN-12579] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** 2,3,4-saturated fatty acyl-CoA synthetase
 
−
** polyketide_synthase
 
−
** long_chain_acyl-_synthetase
 
−
** acyl-_synthetase
 
 
** ORF
 
** ORF
 +
** zinc_finger_fyve_domain-containing_protein
 +
** triacylglycerol_lipase
 +
** class_3_lipase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
+
** [http://enzyme.expasy.org/EC/3.1.1.3 EC-3.1.1.3]
 
* Synonym(s):
 
* Synonym(s):
−
** Acyl-activating enzyme
 
−
** Fatty acid thiokinase (long-chain)
 
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CPD66-39]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[Saturated-Fatty-Acyl-CoA]][c]
+
** 1 [[Dietary-retinyl-esters]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Long-Chain-Fatty-Acids]][c] '''+''' 1 [[CPD-13524]][c] '''+''' 1 [[PROTON]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a 2,3,4-saturated fatty acid[c] '''+''' 1 coenzyme A[c] '''+''' 1 ATP[c] '''=>''' 1 diphosphate[c] '''+''' 1 AMP[c] '''+''' 1 a 2,3,4-saturated fatty acyl CoA[c]
+
** 1 a dietary all-trans-retinyl ester[c] '''+''' 1 H2O[c] '''=>''' 1 a long-chain fatty acid[c] '''+''' 1 all-trans-retinol[c] '''+''' 1 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Tiso_gene_136]]
+
* Gene: [[Tiso_gene_2108]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[Tiso_gene_7855]]
+
* Gene: [[Tiso_gene_17612]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[Tiso_gene_9394]]
+
* Gene: [[Tiso_gene_3215]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
Line 35: Line 32:
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
−
* Gene: [[Tiso_gene_10876]]
+
* Gene: [[Tiso_gene_17639]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[Tiso_gene_4191]]
+
* Gene: [[Tiso_gene_11437]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
** Source: [[annotation-experimental_annotation]]
+
* Gene: [[Tiso_gene_8902]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_17613]]
 +
** Source: [[annotation-in-silico_annotation]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[Tiso_gene_13394]]
+
* Gene: [[Tiso_gene_9140]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[Tiso_gene_500]]
+
* Gene: [[Tiso_gene_288]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_17614]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[Tiso_gene_348]]
+
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_2109]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
** Source: [[annotation-experimental_annotation]]
+
* Gene: [[Tiso_gene_14063]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_16817]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_14062]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_17143]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_7915]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_14109]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_5716]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_2983]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_905]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_19184]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_14064]]
 +
** Source: [[annotation-in-silico_annotation]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[Tiso_gene_135]]
+
* Gene: [[Tiso_gene_906]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5136]], fatty acid β-oxidation II (peroxisome): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5136 PWY-5136]
+
* [[PWY-6857]], retinol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6857 PWY-6857]
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''3''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-7288]], fatty acid β-oxidation (peroxisome, yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7288 PWY-7288]
+
−
** '''3''' reactions found over '''5''' reactions in the full pathway
+
−
* [[FAO-PWY]], fatty acid β-oxidation I: [http://metacyc.org/META/NEW-IMAGE?object=FAO-PWY FAO-PWY]
+
−
** '''5''' reactions found over '''7''' reactions in the full pathway
+
−
* [[PWY66-391]], fatty acid β-oxidation VI (peroxisome): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-391 PWY66-391]
+
−
** '''5''' reactions found over '''7''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
Line 76: Line 108:
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P18163 P18163]
 
−
** [http://www.uniprot.org/uniprot/P39518 P39518]
 
−
** [http://www.uniprot.org/uniprot/O51162 O51162]
 
−
** [http://www.uniprot.org/uniprot/P39002 P39002]
 
−
** [http://www.uniprot.org/uniprot/Q9RYK3 Q9RYK3]
 
−
** [http://www.uniprot.org/uniprot/Q10776 Q10776]
 
−
** [http://www.uniprot.org/uniprot/O83181 O83181]
 
−
** [http://www.uniprot.org/uniprot/Q9RTR4 Q9RTR4]
 
−
** [http://www.uniprot.org/uniprot/P94547 P94547]
 
−
** [http://www.uniprot.org/uniprot/Q9YCF0 Q9YCF0]
 
−
** [http://www.uniprot.org/uniprot/Q9CHR0 Q9CHR0]
 
−
** [http://www.uniprot.org/uniprot/Q9JTK0 Q9JTK0]
 
−
** [http://www.uniprot.org/uniprot/P44446 P44446]
 
−
** [http://www.uniprot.org/uniprot/O30039 O30039]
 
−
** [http://www.uniprot.org/uniprot/O51539 O51539]
 
−
** [http://www.uniprot.org/uniprot/Q9JYJ7 Q9JYJ7]
 
−
** [http://www.uniprot.org/uniprot/P33121 P33121]
 
−
** [http://www.uniprot.org/uniprot/P33124 P33124]
 
−
** [http://www.uniprot.org/uniprot/P30624 P30624]
 
−
** [http://www.uniprot.org/uniprot/Q02602 Q02602]
 
−
** [http://www.uniprot.org/uniprot/P69451 P69451]
 
−
** [http://www.uniprot.org/uniprot/P69452 P69452]
 
−
** [http://www.uniprot.org/uniprot/Q8JZR0 Q8JZR0]
 
−
** [http://www.uniprot.org/uniprot/P47912 P47912]
 
−
** [http://www.uniprot.org/uniprot/P73004 P73004]
 
−
** [http://www.uniprot.org/uniprot/O81614 O81614]
 
−
** [http://www.uniprot.org/uniprot/O15840 O15840]
 
−
** [http://www.uniprot.org/uniprot/Q96537 Q96537]
 
−
** [http://www.uniprot.org/uniprot/Q96538 Q96538]
 
−
** [http://www.uniprot.org/uniprot/Q96338 Q96338]
 
−
** [http://www.uniprot.org/uniprot/Q9T009 Q9T009]
 
−
** [http://www.uniprot.org/uniprot/Q9T0A0 Q9T0A0]
 
−
** [http://www.uniprot.org/uniprot/Q9ZBW6 Q9ZBW6]
 
−
** [http://www.uniprot.org/uniprot/Q9X7Y5 Q9X7Y5]
 
−
** [http://www.uniprot.org/uniprot/Q9X7Z0 Q9X7Z0]
 
−
** [http://www.uniprot.org/uniprot/O60135 O60135]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=2,3,4-saturated fatty acyl-CoA synthetase}}
 
−
{{#set: common name=polyketide_synthase}}
 
−
{{#set: common name=long_chain_acyl-_synthetase}}
 
−
{{#set: common name=acyl-_synthetase}}
 
 
{{#set: common name=ORF}}
 
{{#set: common name=ORF}}
−
{{#set: ec number=EC-6.2.1.3}}
+
{{#set: common name=zinc_finger_fyve_domain-containing_protein}}
−
{{#set: common name=Acyl-activating enzyme|Fatty acid thiokinase (long-chain)}}
+
{{#set: common name=triacylglycerol_lipase}}
−
{{#set: gene associated=Tiso_gene_136|Tiso_gene_7855|Tiso_gene_9394|Tiso_gene_10876|Tiso_gene_4191|Tiso_gene_13394|Tiso_gene_500|Tiso_gene_348|Tiso_gene_135}}
+
{{#set: common name=class_3_lipase}}
−
{{#set: in pathway=PWY-5136|PWY-7288|FAO-PWY|PWY66-391}}
+
{{#set: ec number=EC-3.1.1.3}}
 +
{{#set: gene associated=Tiso_gene_2108|Tiso_gene_17612|Tiso_gene_3215|Tiso_gene_17639|Tiso_gene_11437|Tiso_gene_8902|Tiso_gene_17613|Tiso_gene_9140|Tiso_gene_288|Tiso_gene_17614|Tiso_gene_2109|Tiso_gene_14063|Tiso_gene_16817|Tiso_gene_14062|Tiso_gene_17143|Tiso_gene_7915|Tiso_gene_14109|Tiso_gene_5716|Tiso_gene_2983|Tiso_gene_905|Tiso_gene_19184|Tiso_gene_14064|Tiso_gene_906}}
 +
{{#set: in pathway=PWY-6857}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
 
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:16, 21 March 2018

Reaction RXN-12579

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
    • zinc_finger_fyve_domain-containing_protein
    • triacylglycerol_lipase
    • class_3_lipase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6857, retinol biosynthesis: PWY-6857
    • 3 reactions found over 7 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-12579&oldid=40529"