Difference between revisions of "RXN1G-508"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5392 PWY-5392] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-200783 TAX-...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1G-508 RXN1G-508] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-oxo-lignoceroyl-[acyl-car...")
 
Line 1: Line 1:
−
[[Category:Pathway]]
+
[[Category:Reaction]]
−
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5392 PWY-5392] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1G-508 RXN1G-508] ==
−
* taxonomic range:
+
* direction:
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-200783 TAX-200783]
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** reductive TCA cycle II
+
** 3-oxo-lignoceroyl-[acyl-carrier protein] reductase
 +
** 3-oxoacyl-(acyl-carrier-protein)
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/1.1.1.100 EC-1.1.1.100]
 
* Synonym(s):
 
* Synonym(s):
−
** reductive tricarboxylic acid cycle
 
−
** reductive tricarboxylic acid pathway
 
−
** reductive citric acid cycle
 
−
** reverse citric acid cycle
 
−
** carbon fixation
 
−
** CO2 fixation
 
−
** reductive carboxylic acid cycle
 
  
−
== Reaction(s) found ==
+
== Reaction Formula ==
−
'''5''' reactions found over '''12''' reactions in the full pathway
+
* With identifiers:
−
* [[ACONITATEDEHYDR-RXN]]
+
** 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[3-oxo-lignoceroyl-ACPs]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[R-3-hydroxylignoceroyl-ACPs]][c]
−
** 1 associated gene(s):
+
* With common name(s):
−
*** [[Tiso_gene_13007]]
+
** 1 NADPH[c] '''+''' 1 H+[c] '''+''' 1 a 3-oxo-lignoceroyl-[acp][c] '''=>''' 1 NADP+[c] '''+''' 1 a (3R)-3-hydroxylignoceroyl-[acp][c]
−
** 3 reconstruction source(s) associated:
+
 
−
*** [[annotation-experimental_annotation]]
+
== Genes associated with this reaction  ==
−
*** [[annotation-in-silico_annotation]]
+
Genes have been associated with this reaction based on different elements listed below.
−
*** [[orthology-synechocystis]]
+
* Gene: [[Tiso_gene_9885]]
−
* [[ACONITATEHYDR-RXN]]
+
** Source: [[annotation-experimental_annotation]]
−
** 1 associated gene(s):
+
*** Assignment: EC-NUMBER
−
*** [[Tiso_gene_13007]]
+
* Gene: [[Tiso_gene_13083]]
−
** 2 reconstruction source(s) associated:
+
** Source: [[annotation-in-silico_annotation]]
−
*** [[annotation-in-silico_annotation]]
+
*** Assignment: EC-NUMBER
−
*** [[annotation-experimental_annotation]]
+
** Source: [[annotation-experimental_annotation]]
−
* [[FUMHYDR-RXN]]
+
*** Assignment: EC-NUMBER
−
** 2 associated gene(s):
+
** Source: [[orthology-esiliculosus]]
−
*** [[Tiso_gene_3691]]
+
== Pathways  ==
−
*** [[Tiso_gene_6720]]
+
* [[PWYG-321]], mycolate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWYG-321 PWYG-321]
−
** 6 reconstruction source(s) associated:
+
** '''86''' reactions found over '''182''' reactions in the full pathway
−
*** [[annotation-experimental_annotation]]
+
== Reconstruction information  ==
−
*** [[orthology-esiliculosus]]
+
* Category: [[orthology]]
−
*** [[annotation-in-silico_annotation]]
+
** Source: [[orthology-esiliculosus]]
−
*** [[orthology-athaliana]]
+
*** Tool: [[pantograph]]
−
*** [[manual-primary_network]]
+
* Category: [[annotation]]
−
*** [[orthology-creinhardtii]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[MALATE-DEH-RXN]]
+
*** Tool: [[pathwaytools]]
−
** 2 associated gene(s):
+
** Source: [[annotation-experimental_annotation]]
−
*** [[Tiso_gene_2323]]
+
*** Tool: [[pathwaytools]]
−
*** [[Tiso_gene_1990]]
+
−
** 7 reconstruction source(s) associated:
+
−
*** [[annotation-experimental_annotation]]
+
−
*** [[orthology-esiliculosus]]
+
−
*** [[annotation-in-silico_annotation]]
+
−
*** [[orthology-athaliana]]
+
−
*** [[orthology-synechocystis]]
+
−
*** [[manual-primary_network]]
+
−
*** [[orthology-creinhardtii]]
+
−
* [[SUCCCOASYN-RXN]]
+
−
** 2 associated gene(s):
+
−
*** [[Tiso_gene_15846]]
+
−
*** [[Tiso_gene_11866]]
+
−
** 7 reconstruction source(s) associated:
+
−
*** [[annotation-experimental_annotation]]
+
−
*** [[orthology-esiliculosus]]
+
−
*** [[annotation-in-silico_annotation]]
+
−
*** [[orthology-athaliana]]
+
−
*** [[orthology-synechocystis]]
+
−
*** [[manual-primary_network]]
+
−
*** [[orthology-creinhardtii]]
+
−
== Reaction(s) not found ==
+
−
* [http://metacyc.org/META/NEW-IMAGE?object=2-OXOGLUTARATE-SYNTHASE-RXN 2-OXOGLUTARATE-SYNTHASE-RXN]
+
−
* [http://metacyc.org/META/NEW-IMAGE?object=CITRATE--COA-LIGASE-RXN CITRATE--COA-LIGASE-RXN]
+
−
* [http://metacyc.org/META/NEW-IMAGE?object=PYRUFLAVREDUCT-RXN PYRUFLAVREDUCT-RXN]
+
−
* [http://metacyc.org/META/NEW-IMAGE?object=R23-RXN R23-RXN]
+
−
* [http://metacyc.org/META/NEW-IMAGE?object=R601-RXN R601-RXN]
+
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7929 RXN-7929]
+
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8457 RXN-8457]
+
 
== External links  ==
 
== External links  ==
−
{{#set: taxonomic range=TAX-200783}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=reductive TCA cycle II}}
+
{{#set: common name=3-oxo-lignoceroyl-[acyl-carrier protein] reductase}}
−
{{#set: common name=reductive tricarboxylic acid cycle|reductive tricarboxylic acid pathway|reductive citric acid cycle|reverse citric acid cycle|carbon fixation|CO2 fixation|reductive carboxylic acid cycle}}
+
{{#set: common name=3-oxoacyl-(acyl-carrier-protein)}}
−
{{#set: reaction found=5}}
+
{{#set: ec number=EC-1.1.1.100}}
−
{{#set: total reaction=12}}
+
{{#set: gene associated=Tiso_gene_9885|Tiso_gene_13083}}
−
{{#set: completion rate=42.0}}
+
{{#set: in pathway=PWYG-321}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:20, 21 March 2018

Reaction RXN1G-508

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 3-oxo-lignoceroyl-[acyl-carrier protein] reductase
    • 3-oxoacyl-(acyl-carrier-protein)
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWYG-321, mycolate biosynthesis: PWYG-321
    • 86 reactions found over 182 reactions in the full pathway

Reconstruction information

External links

"3-oxo-lignoceroyl-[acyl-carrier protein] reductase" cannot be used as a page name in this wiki.




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN1G-508&oldid=41017"