Difference between revisions of "RXN-8999"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Gene == Gene Tiso_gene_4493 == * right end position: ** 13169 * transcription direction: ** POSITIVE * left end position: ** 11810 * centisome position: ** 79.835...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8999 RXN-8999] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/2....")
 
Line 1: Line 1:
−
[[Category:Gene]]
+
[[Category:Reaction]]
−
== Gene Tiso_gene_4493 ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8999 RXN-8999] ==
−
* right end position:
+
* direction:
−
** 13169
+
** LEFT-TO-RIGHT
−
* transcription direction:
+
* ec number:
−
** POSITIVE
+
** [http://enzyme.expasy.org/EC/2.5.1.31 EC-2.5.1.31]
−
* left end position:
+
−
** 11810
+
−
* centisome position:
+
−
** 79.83506   
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reactions associated ==
+
== Reaction Formula ==
−
* Reaction: [[RXN-13037]]
+
* With identifiers:
−
** Source: [[annotation-in-silico_annotation]]
+
** 1 [[FARNESYL-PP]][c] '''+''' 8 [[DELTA3-ISOPENTENYL-PP]][c] '''=>''' 1 [[UNDECAPRENYL-DIPHOSPHATE]][c] '''+''' 8 [[PPI]][c]
−
*** Assignment: ec-number
+
* With common name(s):
−
* Reaction: [[RXN-13039]]
+
** 1 (2E,6E)-farnesyl diphosphate[c] '''+''' 8 isopentenyl diphosphate[c] '''=>''' 1 di-trans,octa-cis-undecaprenyl diphosphate[c] '''+''' 8 diphosphate[c]
−
** Source: [[annotation-in-silico_annotation]]
+
 
−
*** Assignment: automated-name-match
+
== Genes associated with this reaction  ==
−
* Reaction: [[RXN-17127]]
+
Genes have been associated with this reaction based on different elements listed below.
−
** Source: [[annotation-in-silico_annotation]]
+
* Gene: [[Tiso_gene_8531]]
−
*** Assignment: automated-name-match
+
** Source: [[orthology-athaliana]]
−
* Reaction: [[RXN-8654]]
+
** Source: [[orthology-synechocystis]]
−
** Source: [[annotation-in-silico_annotation]]
+
** Source: [[orthology-esiliculosus]]
−
*** Assignment: automated-name-match
+
== Pathways  ==
−
* Reaction: [[RXN-8655]]
+
* [[PWY-5785]], di-trans,poly-cis-undecaprenyl phosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5785 PWY-5785]
−
** Source: [[annotation-in-silico_annotation]]
+
** '''1''' reactions found over '''2''' reactions in the full pathway
−
*** Assignment: automated-name-match
+
== Reconstruction information  ==
−
* Reaction: [[RXN0-1141]]
+
* Category: [[orthology]]
−
** Source: [[annotation-in-silico_annotation]]
+
** Source: [[orthology-athaliana]]
−
*** Assignment: automated-name-match
+
*** Tool: [[pantograph]]
−
* Reaction: [[RXN0-5098]]
+
** Source: [[orthology-synechocystis]]
−
** Source: [[annotation-in-silico_annotation]]
+
*** Tool: [[pantograph]]
−
*** Assignment: automated-name-match
+
** Source: [[orthology-esiliculosus]]
−
* Reaction: [[RXN0-947]]
+
*** Tool: [[pantograph]]
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: ec-number
+
−
== Pathways associated ==
+
−
* [[PWY-7382]]
+
−
* [[PWY0-1275]]
+
−
* [[PWY-6987]]
+
−
* [[PWY-6984]]
+
−
* [[PWY0-522]]
+
−
* [[PWY0-501]]
+
 
== External links  ==
 
== External links  ==
−
{{#set: right end position=13169}}
+
* RHEA:
−
{{#set: transcription direction=POSITIVE}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27551 27551]
−
{{#set: left end position=11810}}
+
* LIGAND-RXN:
−
{{#set: centisome position=79.83506    }}
+
** [http://www.genome.jp/dbget-bin/www_bget?R06447 R06447]
−
{{#set: reaction associated=RXN-13037|RXN-13039|RXN-17127|RXN-8654|RXN-8655|RXN0-1141|RXN0-5098|RXN0-947}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R07269 R07269]
−
{{#set: pathway associated=PWY-7382|PWY0-1275|PWY-6987|PWY-6984|PWY0-522|PWY0-501}}
+
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/O82827 O82827]
 +
** [http://www.uniprot.org/uniprot/O43091 O43091]
 +
** [http://www.uniprot.org/uniprot/Q9JX35 Q9JX35]
 +
** [http://www.uniprot.org/uniprot/O67291 O67291]
 +
** [http://www.uniprot.org/uniprot/Q9X1B8 Q9X1B8]
 +
** [http://www.uniprot.org/uniprot/O34559 O34559]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: ec number=EC-2.5.1.31}}
 +
{{#set: gene associated=Tiso_gene_8531}}
 +
{{#set: in pathway=PWY-5785}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-athaliana|orthology-synechocystis|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph}}

Latest revision as of 19:21, 21 March 2018

Reaction RXN-8999

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5785, di-trans,poly-cis-undecaprenyl phosphate biosynthesis: PWY-5785
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-8999&oldid=41077"