Difference between revisions of "PWY-6683"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=R223-RXN R223-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** octanoyl-CoA ligase ** polyke...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6683 PWY-6683] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=R223-RXN R223-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6683 PWY-6683] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
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** octanoyl-CoA ligase
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** sulfate reduction III (assimilatory)
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** polyketide_synthase
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** ORF
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** long_chain_acyl-_synthetase
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** acyl-_synthetase
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* ec number:
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** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
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* Synonym(s):
 
* Synonym(s):
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** sulfur metabolism
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** sulfur assimilation
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''1''' reactions found over '''3''' reactions in the full pathway
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** 1 [[CPD-195]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[CPD-196]][c] '''+''' 1 [[AMP]][c]
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* [[SULFATE-ADENYLYLTRANS-RXN]]
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* With common name(s):
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** 2 associated gene(s):
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** 1 octanoate[c] '''+''' 1 ATP[c] '''+''' 1 coenzyme A[c] '''=>''' 1 diphosphate[c] '''+''' 1 octanoyl-CoA[c] '''+''' 1 AMP[c]
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*** [[Tiso_gene_10254]]
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*** [[Tiso_gene_17879]]
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== Genes associated with this reaction  ==
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** 5 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-athaliana]]
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* Gene: [[Tiso_gene_348]]
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*** [[annotation-in-silico_annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[orthology-synechocystis]]
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*** Assignment: EC-NUMBER
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*** [[orthology-esiliculosus]]
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** Source: [[annotation-experimental_annotation]]
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*** [[manual-primary_network]]
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*** Assignment: EC-NUMBER
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== Reaction(s) not found ==
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* Gene: [[Tiso_gene_136]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12019 RXN-12019]
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** Source: [[annotation-in-silico_annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=SULFITE-REDUCT-RXN SULFITE-REDUCT-RXN]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_10876]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_13394]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_500]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_7855]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_4191]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_135]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_9394]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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== Pathways  ==
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* [[PWY-6920]], 6-gingerol analog biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6920 PWY-6920]
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** '''5''' reactions found over '''6''' reactions in the full pathway
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* [[P221-PWY]], octane oxidation: [http://metacyc.org/META/NEW-IMAGE?object=P221-PWY P221-PWY]
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** '''2''' reactions found over '''5''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: taxonomic range=TAX-2}}
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{{#set: common name=octanoyl-CoA ligase}}
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{{#set: common name=sulfate reduction III (assimilatory)}}
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{{#set: common name=polyketide_synthase}}
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{{#set: common name=sulfur metabolism|sulfur assimilation}}
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{{#set: common name=ORF}}
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{{#set: reaction found=1}}
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{{#set: common name=long_chain_acyl-_synthetase}}
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{{#set: total reaction=3}}
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{{#set: common name=acyl-_synthetase}}
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{{#set: completion rate=33.0}}
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{{#set: ec number=EC-6.2.1.3}}
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{{#set: gene associated=Tiso_gene_348|Tiso_gene_136|Tiso_gene_10876|Tiso_gene_13394|Tiso_gene_500|Tiso_gene_7855|Tiso_gene_4191|Tiso_gene_135|Tiso_gene_9394}}
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{{#set: in pathway=PWY-6920|P221-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 19:27, 21 March 2018

Pathway PWY-6683

  • taxonomic range:
  • common name:
    • sulfate reduction III (assimilatory)
  • Synonym(s):
    • sulfur metabolism
    • sulfur assimilation

Reaction(s) found

1 reactions found over 3 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-6683&oldid=41687"