Difference between revisions of "RXN-8042"

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(Created page with "Category:Gene == Gene Tiso_gene_17216 == * right end position: ** 3672 * transcription direction: ** POSITIVE * left end position: ** 2433 * centisome position: ** 63.2934...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8042 RXN-8042] == * direction: ** LEFT-TO-RIGHT * common name: ** carotene_isomerase ** caroten...")
 
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_17216 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8042 RXN-8042] ==
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* right end position:
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* direction:
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** 3672
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** carotene_isomerase
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* left end position:
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** carotenoid_isomerase
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** 2433
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/5.2.1.13 EC-5.2.1.13]
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** 63.293446   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* Reaction: [[6.3.4.10-RXN]]
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* With identifiers:
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** Source: [[orthology-esiliculosus]]
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** 1 [[CPD-7496]][c] '''=>''' 1 [[CPD1F-114]][c]
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* Reaction: [[6.3.4.11-RXN]]
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* With common name(s):
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** Source: [[orthology-esiliculosus]]
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** 1 prolycopene[c] '''=>''' 1 all-trans-lycopene[c]
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* Reaction: [[6.3.4.9-RXN]]
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** Source: [[orthology-esiliculosus]]
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== Genes associated with this reaction  ==
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* Reaction: [[BIOTINLIG-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_13369]]
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* Reaction: [[RXN-13039]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Tiso_gene_13367]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: automated-name-match
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*** Assignment: AUTOMATED-NAME-MATCH
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* Reaction: [[RXN-17127]]
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* Gene: [[Tiso_gene_917]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: automated-name-match
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*** Assignment: AUTOMATED-NAME-MATCH
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* Reaction: [[RXN-8654]]
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* Gene: [[Tiso_gene_916]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: automated-name-match
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*** Assignment: AUTOMATED-NAME-MATCH
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* Reaction: [[RXN-8655]]
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* Gene: [[Tiso_gene_15802]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: automated-name-match
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*** Assignment: AUTOMATED-NAME-MATCH
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* Reaction: [[RXN0-1141]]
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* Gene: [[Tiso_gene_915]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: automated-name-match
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*** Assignment: AUTOMATED-NAME-MATCH
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* Reaction: [[RXN0-5098]]
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== Pathways  ==
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* [[PWY-6475]], trans-lycopene biosynthesis II (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6475 PWY-6475]
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** '''8''' reactions found over '''8''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: automated-name-match
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*** Tool: [[pathwaytools]]
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== Pathways associated ==
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* [[PWY-6984]]
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* [[PWY0-1264]]
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* [[PWY0-522]]
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* [[PWY0-1275]]
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== External links  ==
 
== External links  ==
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{{#set: right end position=3672}}
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* RHEA:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30974 30974]
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{{#set: left end position=2433}}
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* LIGAND-RXN:
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{{#set: centisome position=63.293446    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R07512 R07512]
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{{#set: reaction associated=6.3.4.10-RXN|6.3.4.11-RXN|6.3.4.9-RXN|BIOTINLIG-RXN|RXN-13039|RXN-17127|RXN-8654|RXN-8655|RXN0-1141|RXN0-5098}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: pathway associated=PWY-6984|PWY0-1264|PWY0-522|PWY0-1275}}
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{{#set: common name=carotene_isomerase}}
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{{#set: common name=carotenoid_isomerase}}
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{{#set: ec number=EC-5.2.1.13}}
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{{#set: gene associated=Tiso_gene_13369|Tiso_gene_13367|Tiso_gene_917|Tiso_gene_916|Tiso_gene_15802|Tiso_gene_915}}
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{{#set: in pathway=PWY-6475}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:34, 21 March 2018

Reaction RXN-8042

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • carotene_isomerase
    • carotenoid_isomerase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 prolycopene[c] => 1 all-trans-lycopene[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6475, trans-lycopene biosynthesis II (plants): PWY-6475
    • 8 reactions found over 8 reactions in the full pathway

Reconstruction information

External links





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