Difference between revisions of "H2Othu"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=MALSYN-RXN MALSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** malate_synthase_g * ec nu...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=H2Othu H2Othu] == * direction: ** REVERSIBLE * common name: ** H2O transport by passive diffusion,...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=MALSYN-RXN MALSYN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=H2Othu H2Othu] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** malate_synthase_g
+
** H2O transport by passive diffusion, Thylakoid Lumen
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/2.3.3.9 EC-2.3.3.9]
+
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[GLYOX]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[ACETYL-COA]][c] '''=>''' 1 [[MAL]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[CO-A]][c]
+
** 1.0 [[WATER]][u] '''<=>''' 1.0 [[WATER]][h]
 
* With common name(s):
 
* With common name(s):
−
** 1 glyoxylate[c] '''+''' 1 H2O[c] '''+''' 1 acetyl-CoA[c] '''=>''' 1 (S)-malate[c] '''+''' 1 H+[c] '''+''' 1 coenzyme A[c]
+
** 1.0 H2O[u] '''<=>''' 1.0 H2O[h]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_14377]]
+
* Gene: [[Tiso_gene_11818]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-creinhardtii]]
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7295]], L-arabinose degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7295 PWY-7295]
 
−
** '''3''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-7294]], xylose degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7294 PWY-7294]
 
−
** '''2''' reactions found over '''7''' reactions in the full pathway
 
−
* [[GLYOXDEG-PWY]], glycolate and glyoxylate degradation II: [http://metacyc.org/META/NEW-IMAGE?object=GLYOXDEG-PWY GLYOXDEG-PWY]
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY]
 
−
** '''9''' reactions found over '''11''' reactions in the full pathway
 
−
* [[GLYOXYLATE-BYPASS]], glyoxylate cycle: [http://metacyc.org/META/NEW-IMAGE?object=GLYOXYLATE-BYPASS GLYOXYLATE-BYPASS]
 
−
** '''6''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
 
−
** '''9''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728]
 
−
** '''11''' reactions found over '''18''' reactions in the full pathway
 
−
* [[PWY-7118]], chitin degradation to ethanol: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7118 PWY-7118]
 
−
** '''4''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-creinhardtii]]
−
*** [[esiliculosus]]
+
*** Tool: [[pantograph]]
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=REVERSIBLE}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18181 18181]
+
{{#set: common name=H2O transport by passive diffusion, Thylakoid Lumen}}
−
* PIR:
+
{{#set: gene associated=Tiso_gene_11818}}
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40715 I40715]
+
{{#set: in pathway=}}
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0195 JX0195]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0196 JX0196]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S15387 S15387]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S17773 S17773]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S17774 S17774]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26645 S26645]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S44186 S44186]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S48493 S48493]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S51788 S51788]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYCNMU SYCNMU]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYCSM2 SYCSM2]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYECMA SYECMA]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYHQMA SYHQMA]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYKVMA SYKVMA]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYRPMA SYRPMA]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T03412 T03412]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07690 T07690]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T44752 T44752]
+
−
* LIGAND-RXN:
+
−
** [http://www.genome.jp/dbget-bin/www_bget?R00472 R00472]
+
−
* UNIPROT:
+
−
** [http://www.uniprot.org/uniprot/P42450 P42450]
+
−
** [http://www.uniprot.org/uniprot/Q02216 Q02216]
+
−
** [http://www.uniprot.org/uniprot/P28344 P28344]
+
−
** [http://www.uniprot.org/uniprot/P28345 P28345]
+
−
** [http://www.uniprot.org/uniprot/P30952 P30952]
+
−
** [http://www.uniprot.org/uniprot/Q43827 Q43827]
+
−
** [http://www.uniprot.org/uniprot/P21826 P21826]
+
−
** [http://www.uniprot.org/uniprot/P37330 P37330]
+
−
** [http://www.uniprot.org/uniprot/P17432 P17432]
+
−
** [http://www.uniprot.org/uniprot/P17815 P17815]
+
−
** [http://www.uniprot.org/uniprot/P08997 P08997]
+
−
** [http://www.uniprot.org/uniprot/P21360 P21360]
+
−
** [http://www.uniprot.org/uniprot/P08216 P08216]
+
−
** [http://www.uniprot.org/uniprot/P13244 P13244]
+
−
** [http://www.uniprot.org/uniprot/P49081 P49081]
+
−
** [http://www.uniprot.org/uniprot/P45458 P45458]
+
−
** [http://www.uniprot.org/uniprot/O32913 O32913]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=malate_synthase_g}}
+
−
{{#set: ec number=EC-2.3.3.9}}
+
−
{{#set: gene associated=Tiso_gene_14377}}
+
−
{{#set: in pathway=PWY-7295|PWY-7294|GLYOXDEG-PWY|P105-PWY|GLYOXYLATE-BYPASS|PWY-6969|PWY-6728|PWY-7118}}
+
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-creinhardtii}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=esiliculosus}}
 
−
{{#set: reconstruction category=annotation}}
 
−
{{#set: reconstruction tool=pathwaytools}}
 
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
 

Latest revision as of 19:35, 21 March 2018

Reaction H2Othu

  • direction:
    • REVERSIBLE
  • common name:
    • H2O transport by passive diffusion, Thylakoid Lumen
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 H2O[u] <=> 1.0 H2O[h]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=H2Othu&oldid=42571"