Difference between revisions of "RXN-7664"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7388 PWY-7388] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-27...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7664 RXN-7664] == * direction: ** LEFT-TO-RIGHT * common name: ** geranylgeranyl_diphosphate_re...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7388 PWY-7388] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7664 RXN-7664] ==
* taxonomic range:
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* direction:
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
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** LEFT-TO-RIGHT
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
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* common name:
 
* common name:
** octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
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** geranylgeranyl_diphosphate_reductase
 
* Synonym(s):
 
* Synonym(s):
** octanoyl-ACP biosynthesis (mitochondria, yeast)
 
  
== Reaction(s) found ==
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== Reaction Formula ==
'''9''' reactions found over '''9''' reactions in the full pathway
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* With identifiers:
* [[3-OXOACYL-ACP-SYNTH-BASE-RXN]]
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** 1 [[PROTON]][c] '''+''' 1 [[CPD-7005]][c] '''+''' 1 [[NADPH]][c] '''=>''' 1 [[CPD-7004]][c] '''+''' 1 [[NADP]][c]
** 9 associated gene(s):
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* With common name(s):
*** [[Tiso_gene_5939]]
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** 1 H+[c] '''+''' 1 geranylgeranyl chlorophyll a[c] '''+''' 1 NADPH[c] '''=>''' 1 dihydrogeranylgeranyl chlorophyll a[c] '''+''' 1 NADP+[c]
*** [[Tiso_gene_500]]
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*** [[Tiso_gene_14485]]
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== Genes associated with this reaction  ==
*** [[Tiso_gene_13394]]
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Genes have been associated with this reaction based on different elements listed below.
*** [[Tiso_gene_136]]
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* Gene: [[Tiso_gene_2613]]
*** [[Tiso_gene_15991]]
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** Source: [[annotation-in-silico_annotation]]
*** [[Tiso_gene_135]]
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*** Assignment: AUTOMATED-NAME-MATCH
*** [[Tiso_gene_19302]]
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** Source: [[annotation-experimental_annotation]]
*** [[Tiso_gene_10876]]
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*** Assignment: AUTOMATED-NAME-MATCH
** 6 reconstruction source(s) associated:
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== Pathways  ==
*** [[annotation-experimental_annotation]]
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* [[PWY-5064]], chlorophyll a biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5064 PWY-5064]
*** [[orthology-esiliculosus]]
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** '''5''' reactions found over '''5''' reactions in the full pathway
*** [[annotation-in-silico_annotation]]
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== Reconstruction information  ==
*** [[orthology-athaliana]]
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* Category: [[annotation]]
*** [[orthology-synechocystis]]
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** Source: [[annotation-experimental_annotation]]
*** [[manual-primary_network]]
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*** Tool: [[pathwaytools]]
* [[4.2.1.58-RXN]]
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** Source: [[annotation-in-silico_annotation]]
** 6 associated gene(s):
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*** Tool: [[pathwaytools]]
*** [[Tiso_gene_13394]]
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*** [[Tiso_gene_6884]]
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*** [[Tiso_gene_136]]
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*** [[Tiso_gene_10876]]
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*** [[Tiso_gene_500]]
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*** [[Tiso_gene_135]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[manual-primary_network]]
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*** [[annotation-in-silico_annotation]]
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* [[ACETYL-COA-CARBOXYLTRANSFER-RXN]]
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** 4 associated gene(s):
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*** [[Tiso_gene_2812]]
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*** [[Tiso_gene_3800]]
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*** [[Tiso_gene_5029]]
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*** [[Tiso_gene_7965]]
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** 5 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-athaliana]]
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*** [[annotation-in-silico_annotation]]
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*** [[manual-primary_network]]
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*** [[orthology-esiliculosus]]
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* [[MALONYL-COA-ACP-TRANSACYL-RXN]]
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** 7 associated gene(s):
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*** [[Tiso_gene_10876]]
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*** [[Tiso_gene_136]]
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*** [[Tiso_gene_19309]]
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*** [[Tiso_gene_135]]
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*** [[Tiso_gene_18460]]
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*** [[Tiso_gene_500]]
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*** [[Tiso_gene_13394]]
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** 5 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[manual-primary_network]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
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* [[RXN-14972]]
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** 0 associated gene:
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** 2 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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* [[RXN-14973]]
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** 0 associated gene:
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** 2 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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* [[RXN-9514]]
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** 10 associated gene(s):
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*** [[Tiso_gene_13394]]
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*** [[Tiso_gene_16579]]
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*** [[Tiso_gene_136]]
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*** [[Tiso_gene_135]]
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*** [[Tiso_gene_500]]
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*** [[Tiso_gene_13083]]
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*** [[Tiso_gene_10876]]
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*** [[Tiso_gene_9885]]
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*** [[Tiso_gene_10415]]
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*** [[Tiso_gene_624]]
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** 5 reconstruction source(s) associated:
+
*** [[annotation-experimental_annotation]]
+
*** [[manual-primary_network]]
+
*** [[annotation-in-silico_annotation]]
+
*** [[orthology-synechocystis]]
+
*** [[orthology-esiliculosus]]
+
* [[RXN-9515]]
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** 5 associated gene(s):
+
*** [[Tiso_gene_10876]]
+
*** [[Tiso_gene_13394]]
+
*** [[Tiso_gene_136]]
+
*** [[Tiso_gene_135]]
+
*** [[Tiso_gene_500]]
+
** 3 reconstruction source(s) associated:
+
*** [[annotation-experimental_annotation]]
+
*** [[manual-primary_network]]
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*** [[annotation-in-silico_annotation]]
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* [[RXN-9516]]
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** 4 associated gene(s):
+
*** [[Tiso_gene_5939]]
+
*** [[Tiso_gene_14485]]
+
*** [[Tiso_gene_15991]]
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*** [[Tiso_gene_19302]]
+
** 6 reconstruction source(s) associated:
+
*** [[annotation-experimental_annotation]]
+
*** [[orthology-esiliculosus]]
+
*** [[annotation-in-silico_annotation]]
+
*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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== Reaction(s) not found ==
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== External links  ==
 
== External links  ==
{{#set: taxonomic range=TAX-2759}}
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{{#set: direction=LEFT-TO-RIGHT}}
{{#set: taxonomic range=TAX-4751}}
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{{#set: common name=geranylgeranyl_diphosphate_reductase}}
{{#set: common name=octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)}}
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{{#set: gene associated=Tiso_gene_2613}}
{{#set: common name=octanoyl-ACP biosynthesis (mitochondria, yeast)}}
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{{#set: in pathway=PWY-5064}}
{{#set: reaction found=9}}
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{{#set: reconstruction category=annotation}}
{{#set: total reaction=9}}
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{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation}}
{{#set: completion rate=100.0}}
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{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:36, 21 March 2018

Reaction RXN-7664

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • geranylgeranyl_diphosphate_reductase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H+[c] + 1 geranylgeranyl chlorophyll a[c] + 1 NADPH[c] => 1 dihydrogeranylgeranyl chlorophyll a[c] + 1 NADP+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5064, chlorophyll a biosynthesis II: PWY-5064
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links