Difference between revisions of "RXN-13001"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-882 PWY-882] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-330...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13001 RXN-13001] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-882 PWY-882] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13001 RXN-13001] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
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** LEFT-TO-RIGHT
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* common name:
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* ec number:
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** L-ascorbate biosynthesis I (L-galactose pathway)
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** [http://enzyme.expasy.org/EC/4.2.1.134 EC-4.2.1.134]
 
* Synonym(s):
 
* Synonym(s):
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** vitamin C biosynthesis
 
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** ascorbic acid biosynthesis
 
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** L-ascorbic acid biosynthesis I
 
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** Smirnoff-Wheeler pathway
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''6''' reactions found over '''8''' reactions in the full pathway
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* With identifiers:
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* [[2.7.7.13-RXN]]
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** 1 [[CPD-14419]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[CPD-14420]][c]
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** 1 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_14704]]
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** 1 3R-hydroxy-icosatrienoyl-CoA[c] '''=>''' 1 H2O[c] '''+''' 1 icosatrienoyl-2-enoyl CoA[c]
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** 1 reconstruction source(s) associated:
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*** [[orthology-synechocystis]]
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== Genes associated with this reaction  ==
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* [[GALACTONOLACTONE-DEHYDROGENASE-RXN]]
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== Pathways  ==
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** 1 associated gene(s):
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* [[PWY-7602]], icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7602 PWY-7602]
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*** [[Tiso_gene_210]]
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** '''7''' reactions found over '''7''' reactions in the full pathway
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** 2 reconstruction source(s) associated:
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* [[PWY-7619]], juniperonate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7619 PWY-7619]
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*** [[annotation-in-silico_annotation]]
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** '''4''' reactions found over '''5''' reactions in the full pathway
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*** [[orthology-esiliculosus]]
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* [[PWY-7724]], icosapentaenoate biosynthesis III (8-desaturase, mammals): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7724 PWY-7724]
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* [[PHOSMANMUT-RXN]]
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** '''5''' reactions found over '''7''' reactions in the full pathway
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** 4 associated gene(s):
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== Reconstruction information  ==
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*** [[Tiso_gene_5802]]
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* Category: [[annotation]]
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*** [[Tiso_gene_13477]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_14704]]
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*** Tool: [[pathwaytools]]
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*** [[Tiso_gene_4816]]
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** 6 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[orthology-creinhardtii]]
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* [[RXN-1882]]
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** 1 associated gene(s):
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*** [[Tiso_gene_6621]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-athaliana]]
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*** [[orthology-esiliculosus]]
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* [[RXN-1884]]
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** 5 associated gene(s):
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*** [[Tiso_gene_14920]]
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*** [[Tiso_gene_14624]]
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*** [[Tiso_gene_18748]]
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*** [[Tiso_gene_703]]
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*** [[Tiso_gene_4219]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-athaliana]]
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*** [[orthology-esiliculosus]]
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* [[RXNQT-4142]]
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** 3 associated gene(s):
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*** [[Tiso_gene_11614]]
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*** [[Tiso_gene_10754]]
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*** [[Tiso_gene_15599]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-athaliana]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=MANNPISOM-RXN MANNPISOM-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXNQT-4141 RXNQT-4141]
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== External links  ==
 
== External links  ==
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* ARACYC:
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{{#set: direction=LEFT-TO-RIGHT}}
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** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY-882 PWY-882]
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{{#set: ec number=EC-4.2.1.134}}
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{{#set: taxonomic range=TAX-33090}}
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{{#set: in pathway=PWY-7602|PWY-7619|PWY-7724}}
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{{#set: common name=L-ascorbate biosynthesis I (L-galactose pathway)}}
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{{#set: reconstruction category=annotation}}
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{{#set: common name=vitamin C biosynthesis|ascorbic acid biosynthesis|L-ascorbic acid biosynthesis I|Smirnoff-Wheeler pathway}}
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{{#set: reconstruction source=annotation-in-silico_annotation}}
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{{#set: reaction found=6}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: total reaction=8}}
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{{#set: completion rate=75.0}}
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Latest revision as of 19:37, 21 March 2018

Reaction RXN-13001

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 3R-hydroxy-icosatrienoyl-CoA[c] => 1 H2O[c] + 1 icosatrienoyl-2-enoyl CoA[c]

Genes associated with this reaction

Pathways

  • PWY-7602, icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes): PWY-7602
    • 7 reactions found over 7 reactions in the full pathway
  • PWY-7619, juniperonate biosynthesis: PWY-7619
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-7724, icosapentaenoate biosynthesis III (8-desaturase, mammals): PWY-7724
    • 5 reactions found over 7 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-13001&oldid=42840"