|
|
| Line 1: |
Line 1: |
| − | [[Category:Pathway]] | + | [[Category:Gene]] |
| − | == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-735 PWY-735] == | + | == Gene Tiso_gene_16524 == |
| − | * taxonomic range: | + | * right end position: |
| − | ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090] | + | ** 4155 |
| − | * common name: | + | * transcription direction: |
| − | ** jasmonic acid biosynthesis | + | ** NEGATIVE |
| | + | * left end position: |
| | + | ** 2633 |
| | + | * centisome position: |
| | + | ** 61.204094 |
| | * Synonym(s): | | * Synonym(s): |
| − | ** jasmonate biosynthesis
| |
| | | | |
| − | == Reaction(s) found == | + | == Reactions associated == |
| − | '''15''' reactions found over '''19''' reactions in the full pathway
| + | * Reaction: [[3.1.3.16-RXN]] |
| − | * [[RXN-10695]] | + | ** Source: [[annotation-in-silico_annotation]] |
| − | ** 2 associated gene(s):
| + | *** Assignment: automated-name-match |
| − | *** [[Tiso_gene_14183]]
| + | ** Source: [[annotation-experimental_annotation]] |
| − | *** [[Tiso_gene_12275]]
| + | *** Assignment: automated-name-match |
| − | ** 1 reconstruction source(s) associated:
| + | == Pathways associated == |
| − | *** [[orthology-esiliculosus]]
| + | |
| − | * [[RXN-10696]]
| + | |
| − | ** 1 associated gene(s):
| + | |
| − | *** [[Tiso_gene_18566]]
| + | |
| − | ** 2 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | *** [[orthology-esiliculosus]]
| + | |
| − | * [[RXN-10697]]
| + | |
| − | ** 3 associated gene(s):
| + | |
| − | *** [[Tiso_gene_16145]]
| + | |
| − | *** [[Tiso_gene_14262]]
| + | |
| − | *** [[Tiso_gene_6885]]
| + | |
| − | ** 1 reconstruction source(s) associated:
| + | |
| − | *** [[orthology-esiliculosus]]
| + | |
| − | * [[RXN-10698]]
| + | |
| − | ** 6 associated gene(s):
| + | |
| − | *** [[Tiso_gene_14026]]
| + | |
| − | *** [[Tiso_gene_14027]]
| + | |
| − | *** [[Tiso_gene_5857]]
| + | |
| − | *** [[Tiso_gene_18839]]
| + | |
| − | *** [[Tiso_gene_14262]]
| + | |
| − | *** [[Tiso_gene_18838]]
| + | |
| − | ** 3 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | *** [[annotation-experimental_annotation]]
| + | |
| − | *** [[orthology-esiliculosus]]
| + | |
| − | * [[RXN-10699]]
| + | |
| − | ** 5 associated gene(s): | + | |
| − | *** [[Tiso_gene_3855]]
| + | |
| − | *** [[Tiso_gene_17451]]
| + | |
| − | *** [[Tiso_gene_15327]]
| + | |
| − | *** [[Tiso_gene_10116]]
| + | |
| − | *** [[Tiso_gene_3856]]
| + | |
| − | ** 2 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | *** [[annotation-experimental_annotation]] | + | |
| − | * [[RXN-10700]]
| + | |
| − | ** 5 associated gene(s):
| + | |
| − | *** [[Tiso_gene_15327]]
| + | |
| − | *** [[Tiso_gene_10116]]
| + | |
| − | *** [[Tiso_gene_3855]]
| + | |
| − | *** [[Tiso_gene_17451]]
| + | |
| − | *** [[Tiso_gene_3856]]
| + | |
| − | ** 2 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | *** [[annotation-experimental_annotation]] | + | |
| − | * [[RXN-10701]]
| + | |
| − | ** 5 associated gene(s):
| + | |
| − | *** [[Tiso_gene_3855]]
| + | |
| − | *** [[Tiso_gene_10116]]
| + | |
| − | *** [[Tiso_gene_17451]]
| + | |
| − | *** [[Tiso_gene_3856]]
| + | |
| − | *** [[Tiso_gene_15327]]
| + | |
| − | ** 2 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | *** [[annotation-experimental_annotation]]
| + | |
| − | * [[RXN-10702]] | + | |
| − | ** 6 associated gene(s): | + | |
| − | *** [[Tiso_gene_18838]]
| + | |
| − | *** [[Tiso_gene_5857]]
| + | |
| − | *** [[Tiso_gene_18839]]
| + | |
| − | *** [[Tiso_gene_14027]]
| + | |
| − | *** [[Tiso_gene_14026]]
| + | |
| − | *** [[Tiso_gene_14262]]
| + | |
| − | ** 3 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | *** [[annotation-experimental_annotation]]
| + | |
| − | *** [[orthology-esiliculosus]]
| + | |
| − | * [[RXN-10703]]
| + | |
| − | ** 6 associated gene(s):
| + | |
| − | *** [[Tiso_gene_18838]]
| + | |
| − | *** [[Tiso_gene_5857]]
| + | |
| − | *** [[Tiso_gene_18839]]
| + | |
| − | *** [[Tiso_gene_14262]]
| + | |
| − | *** [[Tiso_gene_14027]]
| + | |
| − | *** [[Tiso_gene_14026]]
| + | |
| − | ** 3 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-experimental_annotation]]
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | *** [[orthology-esiliculosus]]
| + | |
| − | * [[RXN-10704]]
| + | |
| − | ** 3 associated gene(s):
| + | |
| − | *** [[Tiso_gene_16145]]
| + | |
| − | *** [[Tiso_gene_6885]]
| + | |
| − | *** [[Tiso_gene_14262]]
| + | |
| − | ** 1 reconstruction source(s) associated:
| + | |
| − | *** [[orthology-esiliculosus]]
| + | |
| − | * [[RXN-10705]]
| + | |
| − | ** 3 associated gene(s):
| + | |
| − | *** [[Tiso_gene_14262]]
| + | |
| − | *** [[Tiso_gene_16145]]
| + | |
| − | *** [[Tiso_gene_6885]]
| + | |
| − | ** 1 reconstruction source(s) associated:
| + | |
| − | *** [[orthology-esiliculosus]]
| + | |
| − | * [[RXN-10706]]
| + | |
| − | ** 1 associated gene(s):
| + | |
| − | *** [[Tiso_gene_18566]]
| + | |
| − | ** 2 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | *** [[orthology-esiliculosus]]
| + | |
| − | * [[RXN-10707]]
| + | |
| − | ** 1 associated gene(s):
| + | |
| − | *** [[Tiso_gene_18566]]
| + | |
| − | ** 2 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | *** [[orthology-esiliculosus]]
| + | |
| − | * [[RXN-10708]]
| + | |
| − | ** 4 associated gene(s):
| + | |
| − | *** [[Tiso_gene_10984]]
| + | |
| − | *** [[Tiso_gene_801]]
| + | |
| − | *** [[Tiso_gene_7477]]
| + | |
| − | *** [[Tiso_gene_800]]
| + | |
| − | ** 1 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | * [[RXN-1321]]
| + | |
| − | ** 1 associated gene(s):
| + | |
| − | *** [[Tiso_gene_4463]]
| + | |
| − | ** 1 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | == Reaction(s) not found == | + | |
| − | * [http://metacyc.org/META/NEW-IMAGE?object=12-OXOPHYTODIENOATE-REDUCTASE-RXN 12-OXOPHYTODIENOATE-REDUCTASE-RXN]
| + | |
| − | * [http://metacyc.org/META/NEW-IMAGE?object=ALLENE-OXIDE-CYCLASE-RXN ALLENE-OXIDE-CYCLASE-RXN]
| + | |
| − | * [http://metacyc.org/META/NEW-IMAGE?object=RXN-745 RXN-745]
| + | |
| − | * [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-19 RXN1F-19]
| + | |
| | == External links == | | == External links == |
| − | * ARACYC:
| + | {{#set: right end position=4155}} |
| − | ** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY-735 PWY-735]
| + | {{#set: transcription direction=NEGATIVE}} |
| − | {{#set: taxonomic range=TAX-33090}} | + | {{#set: left end position=2633}} |
| − | {{#set: common name=jasmonic acid biosynthesis}} | + | {{#set: centisome position=61.204094 }} |
| − | {{#set: common name=jasmonate biosynthesis}} | + | {{#set: reaction associated=3.1.3.16-RXN}} |
| − | {{#set: reaction found=15}} | + | |
| − | {{#set: total reaction=19}} | + | |
| − | {{#set: completion rate=79.0}}
| + | |
