Difference between revisions of "Tiso gene 8035"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8443 RXN-8443] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/2....")
(Created page with "Category:Gene == Gene Tiso_gene_8035 == * right end position: ** 9857 * transcription direction: ** POSITIVE * left end position: ** 6898 * centisome position: ** 37.47691...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8443 RXN-8443] ==
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== Gene Tiso_gene_8035 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 9857
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* ec number:
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* transcription direction:
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** [http://enzyme.expasy.org/EC/2.7.1.173 EC-2.7.1.173]
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** POSITIVE
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* left end position:
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** 6898
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* centisome position:
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** 37.47691   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[GTP-CYCLOHYDRO-II-RXN]]
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** 1 [[ATP]][c] '''+''' 1 [[CPD-8259]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[NICOTINATE_NUCLEOTIDE]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 ATP[c] '''+''' 1 β-D-ribosylnicotinate[c] '''=>''' 1 H+[c] '''+''' 1 ADP[c] '''+''' 1 β-nicotinate D-ribonucleotide[c]
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* Reaction: [[RIBOFLAVINSYNREDUC-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: ec-number
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_18221]]
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−
** Source: [[orthology-athaliana]]
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−
** Source: [[orthology-esiliculosus]]
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−
* Gene: [[Tiso_gene_2752]]
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−
** Source: [[orthology-athaliana]]
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−
* Gene: [[Tiso_gene_19763]]
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−
** Source: [[orthology-athaliana]]
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−
* Gene: [[Tiso_gene_12827]]
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−
** Source: [[orthology-athaliana]]
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−
* Gene: [[Tiso_gene_19151]]
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−
** Source: [[orthology-athaliana]]
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−
** Source: [[orthology-esiliculosus]]
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−
* Gene: [[Tiso_gene_12828]]
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−
** Source: [[orthology-athaliana]]
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−
* Gene: [[Tiso_gene_12252]]
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−
** Source: [[orthology-athaliana]]
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−
** Source: [[orthology-esiliculosus]]
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−
* Gene: [[Tiso_gene_17530]]
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−
** Source: [[orthology-athaliana]]
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−
** Source: [[orthology-esiliculosus]]
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−
* Gene: [[Tiso_gene_8616]]
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−
** Source: [[orthology-esiliculosus]]
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−
* Gene: [[Tiso_gene_17047]]
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−
** Source: [[orthology-athaliana]]
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−
* Gene: [[Tiso_gene_9582]]
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−
** Source: [[orthology-athaliana]]
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−
** Source: [[orthology-esiliculosus]]
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−
* Gene: [[Tiso_gene_8480]]
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−
** Source: [[orthology-athaliana]]
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−
* Gene: [[Tiso_gene_4145]]
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−
** Source: [[orthology-esiliculosus]]
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−
* Gene: [[Tiso_gene_15010]]
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−
** Source: [[orthology-athaliana]]
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−
* Gene: [[Tiso_gene_19611]]
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−
** Source: [[orthology-athaliana]]
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−
** Source: [[orthology-esiliculosus]]
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−
* Gene: [[Tiso_gene_1696]]
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−
** Source: [[orthology-athaliana]]
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−
* Gene: [[Tiso_gene_12183]]
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−
** Source: [[orthology-athaliana]]
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−
* Gene: [[Tiso_gene_19579]]
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−
** Source: [[orthology-athaliana]]
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−
* Gene: [[Tiso_gene_6111]]
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−
** Source: [[orthology-athaliana]]
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−
* Gene: [[Tiso_gene_1894]]
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−
** Source: [[orthology-athaliana]]
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−
** Source: [[orthology-esiliculosus]]
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−
* Gene: [[Tiso_gene_4144]]
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−
** Source: [[orthology-esiliculosus]]
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−
* Gene: [[Tiso_gene_4902]]
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−
** Source: [[orthology-athaliana]]
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−
* Gene: [[Tiso_gene_13509]]
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−
** Source: [[orthology-athaliana]]
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−
* Gene: [[Tiso_gene_8561]]
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−
** Source: [[orthology-athaliana]]
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−
** Source: [[orthology-esiliculosus]]
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−
* Gene: [[Tiso_gene_17305]]
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−
** Source: [[orthology-athaliana]]
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−
* Gene: [[Tiso_gene_12450]]
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−
** Source: [[orthology-athaliana]]
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−
** Source: [[orthology-esiliculosus]]
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−
* Gene: [[Tiso_gene_17980]]
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−
** Source: [[orthology-athaliana]]
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−
* Gene: [[Tiso_gene_15483]]
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−
** Source: [[orthology-athaliana]]
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−
* Gene: [[Tiso_gene_18943]]
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−
** Source: [[orthology-athaliana]]
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−
* Gene: [[Tiso_gene_13724]]
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−
** Source: [[orthology-athaliana]]
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−
* Gene: [[Tiso_gene_12316]]
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−
** Source: [[orthology-athaliana]]
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−
* Gene: [[Tiso_gene_2262]]
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−
** Source: [[orthology-athaliana]]
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−
** Source: [[orthology-esiliculosus]]
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−
* Gene: [[Tiso_gene_14059]]
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−
** Source: [[orthology-athaliana]]
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−
** Source: [[orthology-esiliculosus]]
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−
* Gene: [[Tiso_gene_14030]]
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−
** Source: [[orthology-athaliana]]
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−
** Source: [[orthology-esiliculosus]]
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−
* Gene: [[Tiso_gene_16455]]
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−
** Source: [[orthology-athaliana]]
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−
** Source: [[orthology-esiliculosus]]
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−
* Gene: [[Tiso_gene_17795]]
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−
** Source: [[orthology-athaliana]]
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−
== Pathways  ==
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* [[PWY-5381]], pyridine nucleotide cycling (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5381 PWY-5381]
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** '''3''' reactions found over '''11''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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== Pathways associated ==
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* [[PWY-7539]]
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* [[PWY-6168]]
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* [[RIBOSYN2-PWY]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=9857}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25568 25568]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=6898}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03347 R03347]
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{{#set: centisome position=37.47691    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=GTP-CYCLOHYDRO-II-RXN|RIBOFLAVINSYNREDUC-RXN}}
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{{#set: ec number=EC-2.7.1.173}}
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{{#set: pathway associated=PWY-7539|PWY-6168|RIBOSYN2-PWY}}
−
{{#set: gene associated=Tiso_gene_18221|Tiso_gene_2752|Tiso_gene_19763|Tiso_gene_12827|Tiso_gene_19151|Tiso_gene_12828|Tiso_gene_12252|Tiso_gene_17530|Tiso_gene_8616|Tiso_gene_17047|Tiso_gene_9582|Tiso_gene_8480|Tiso_gene_4145|Tiso_gene_15010|Tiso_gene_19611|Tiso_gene_1696|Tiso_gene_12183|Tiso_gene_19579|Tiso_gene_6111|Tiso_gene_1894|Tiso_gene_4144|Tiso_gene_4902|Tiso_gene_13509|Tiso_gene_8561|Tiso_gene_17305|Tiso_gene_12450|Tiso_gene_17980|Tiso_gene_15483|Tiso_gene_18943|Tiso_gene_13724|Tiso_gene_12316|Tiso_gene_2262|Tiso_gene_14059|Tiso_gene_14030|Tiso_gene_16455|Tiso_gene_17795}}
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−
{{#set: in pathway=PWY-5381}}
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−
{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-athaliana|orthology-esiliculosus}}
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−
{{#set: reconstruction tool=pantograph}}
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Latest revision as of 19:40, 21 March 2018

Gene Tiso_gene_8035

  • right end position:
    • 9857
  • transcription direction:
    • POSITIVE
  • left end position:
    • 6898
  • centisome position:
    • 37.47691
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_8035&oldid=43160"