Difference between revisions of "PWY-6473"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9528 RXN-9528] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-oxo-decanoyl-[acyl-carrier...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6473 PWY-6473] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-3...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9528 RXN-9528] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6473 PWY-6473] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
 
* common name:
 
* common name:
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** 3-oxo-decanoyl-[acyl-carrier protein] reductase
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** 4-aminobutanoate degradation IV
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** polyketide_synthase
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** 3-oxoacyl-(acyl-carrier-protein)
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* ec number:
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** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
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** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
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** [http://enzyme.expasy.org/EC/1.1.1.100 EC-1.1.1.100]
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* Synonym(s):
 
* Synonym(s):
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** GABA metabolism during fruit ripening
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''1''' reactions found over '''2''' reactions in the full pathway
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** 1 [[PROTON]][c] '''+''' 1 [[3-oxo-decanoyl-ACPs]][c] '''+''' 1 [[NADPH]][c] '''=>''' 1 [[Beta-hydroxydecanoyl-ACPs]][c] '''+''' 1 [[NADP]][c]
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* [[SUCCINATE-SEMIALDEHYDE-DEHYDROGENASE-RXN]]
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* With common name(s):
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** 3 associated gene(s):
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** 1 H+[c] '''+''' 1 a 3-oxo-decanoyl-[acp][c] '''+''' 1 NADPH[c] '''=>''' 1 a (3R)-3-hydroxydecanoyl-[acp][c] '''+''' 1 NADP+[c]
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*** [[Tiso_gene_777]]
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*** [[Tiso_gene_91]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_6952]]
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Genes have been associated with this reaction based on different elements listed below.
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** 3 reconstruction source(s) associated:
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* Gene: [[Tiso_gene_135]]
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*** [[annotation-experimental_annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[orthology-creinhardtii]]
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*** Assignment: EC-NUMBER
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*** [[annotation-in-silico_annotation]]
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* Gene: [[Tiso_gene_10876]]
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== Reaction(s) not found ==
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** Source: [[annotation-in-silico_annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-6902 RXN-6902]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_13083]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-synechocystis]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_136]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_624]]
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** Source: [[orthology-synechocystis]]
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* Gene: [[Tiso_gene_500]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_16579]]
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** Source: [[orthology-synechocystis]]
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* Gene: [[Tiso_gene_10415]]
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** Source: [[orthology-synechocystis]]
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* Gene: [[Tiso_gene_13394]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_9885]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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== Pathways  ==
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* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
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** '''31''' reactions found over '''31''' reactions in the full pathway
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* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
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** '''31''' reactions found over '''31''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: taxonomic range=TAX-33090}}
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{{#set: common name=3-oxo-decanoyl-[acyl-carrier protein] reductase}}
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{{#set: common name=4-aminobutanoate degradation IV}}
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{{#set: common name=polyketide_synthase}}
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{{#set: common name=GABA metabolism during fruit ripening}}
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{{#set: common name=3-oxoacyl-(acyl-carrier-protein)}}
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{{#set: reaction found=1}}
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{{#set: ec number=EC-2.3.1.86}}
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{{#set: total reaction=2}}
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{{#set: ec number=EC-2.3.1.85}}
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{{#set: completion rate=50.0}}
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{{#set: ec number=EC-1.1.1.100}}
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{{#set: gene associated=Tiso_gene_135|Tiso_gene_10876|Tiso_gene_13083|Tiso_gene_136|Tiso_gene_624|Tiso_gene_500|Tiso_gene_16579|Tiso_gene_10415|Tiso_gene_13394|Tiso_gene_9885}}
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{{#set: in pathway=PWY-5971|PWY-5994}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|manual-primary_network|annotation-in-silico_annotation|orthology-synechocystis|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 19:40, 21 March 2018

Pathway PWY-6473

  • taxonomic range:
  • common name:
    • 4-aminobutanoate degradation IV
  • Synonym(s):
    • GABA metabolism during fruit ripening

Reaction(s) found

1 reactions found over 2 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-6473&oldid=43167"