Difference between revisions of "PWY-7606"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.14.11.2-RXN 1.14.11.2-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** prolyl_4-hydroxylas...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7606 PWY-7606] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-3...")
 
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Pathway]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.14.11.2-RXN 1.14.11.2-RXN] ==
+
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7606 PWY-7606] ==
−
* direction:
+
* taxonomic range:
−
** LEFT-TO-RIGHT
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-33208]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
 
* common name:
 
* common name:
−
** prolyl_4-hydroxylase
+
** docosahexaenoate biosynthesis III (6-desaturase, mammals)
−
** ORF
+
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/1.14.11.2 EC-1.14.11.2]
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
'''14''' reactions found over '''14''' reactions in the full pathway
−
** 1 [[PROCOLLAGEN-L-PROLINE]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''=>''' 1 [[SUC]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CPD-6321]][c]
+
* [[RXN-13442]]
−
* With common name(s):
+
** 0 associated gene:
−
** 1 a [procollagen]-L-proline[c] '''+''' 1 oxygen[c] '''+''' 1 2-oxoglutarate[c] '''=>''' 1 succinate[c] '''+''' 1 CO2[c] '''+''' 1 a [procollagen] trans 4-hyroxy-L-proline[c]
+
** 2 reconstruction source(s) associated:
−
 
+
*** [[annotation-in-silico_annotation]]
−
== Genes associated with this reaction  ==
+
*** [[annotation-experimental_annotation]]
−
Genes have been associated with this reaction based on different elements listed below.
+
* [[RXN-13443]]
−
* Gene: [[Tiso_gene_4246]]
+
** 3 associated gene(s):
−
** Source: [[annotation-in-silico_annotation]]
+
*** [[Tiso_gene_9871]]
−
*** Assignment: AUTOMATED-NAME-MATCH
+
*** [[Tiso_gene_13083]]
−
* Gene: [[Tiso_gene_18689]]
+
*** [[Tiso_gene_9885]]
−
** Source: [[orthology-esiliculosus]]
+
** 3 reconstruction source(s) associated:
−
* Gene: [[Tiso_gene_18933]]
+
*** [[annotation-experimental_annotation]]
−
** Source: [[orthology-esiliculosus]]
+
*** [[annotation-in-silico_annotation]]
−
* Gene: [[Tiso_gene_9035]]
+
*** [[orthology-esiliculosus]]
−
** Source: [[orthology-esiliculosus]]
+
* [[RXN-13444]]
−
* Gene: [[Tiso_gene_3021]]
+
** 0 associated gene:
−
** Source: [[orthology-esiliculosus]]
+
** 2 reconstruction source(s) associated:
−
* Gene: [[Tiso_gene_13008]]
+
*** [[annotation-in-silico_annotation]]
−
** Source: [[annotation-in-silico_annotation]]
+
*** [[annotation-experimental_annotation]]
−
*** Assignment: EC-NUMBER
+
* [[RXN-13445]]
−
** Source: [[annotation-experimental_annotation]]
+
** 0 associated gene:
−
*** Assignment: EC-NUMBER
+
** 2 reconstruction source(s) associated:
−
* Gene: [[Tiso_gene_9636]]
+
*** [[annotation-in-silico_annotation]]
−
** Source: [[orthology-esiliculosus]]
+
*** [[annotation-experimental_annotation]]
−
* Gene: [[Tiso_gene_9165]]
+
* [[RXN-16082]]
−
** Source: [[orthology-esiliculosus]]
+
** 0 associated gene:
−
* Gene: [[Tiso_gene_6296]]
+
** 2 reconstruction source(s) associated:
−
** Source: [[orthology-esiliculosus]]
+
*** [[annotation-experimental_annotation]]
−
* Gene: [[Tiso_gene_2158]]
+
*** [[annotation-in-silico_annotation]]
−
** Source: [[orthology-esiliculosus]]
+
* [[RXN-16103]]
−
* Gene: [[Tiso_gene_16122]]
+
** 0 associated gene:
−
** Source: [[orthology-esiliculosus]]
+
** 2 reconstruction source(s) associated:
−
* Gene: [[Tiso_gene_9455]]
+
*** [[annotation-experimental_annotation]]
−
** Source: [[orthology-esiliculosus]]
+
*** [[annotation-in-silico_annotation]]
−
* Gene: [[Tiso_gene_16842]]
+
* [[RXN-16129]]
−
** Source: [[orthology-esiliculosus]]
+
** 1 associated gene(s):
−
* Gene: [[Tiso_gene_17823]]
+
*** [[Tiso_gene_9871]]
−
** Source: [[orthology-esiliculosus]]
+
** 2 reconstruction source(s) associated:
−
* Gene: [[Tiso_gene_18208]]
+
*** [[annotation-in-silico_annotation]]
−
** Source: [[orthology-esiliculosus]]
+
*** [[annotation-experimental_annotation]]
−
* Gene: [[Tiso_gene_292]]
+
* [[RXN-16130]]
−
** Source: [[orthology-esiliculosus]]
+
** 0 associated gene:
−
* Gene: [[Tiso_gene_18145]]
+
** 2 reconstruction source(s) associated:
−
** Source: [[orthology-esiliculosus]]
+
*** [[annotation-in-silico_annotation]]
−
* Gene: [[Tiso_gene_9873]]
+
*** [[annotation-experimental_annotation]]
−
** Source: [[orthology-esiliculosus]]
+
* [[RXN-16131]]
−
* Gene: [[Tiso_gene_15328]]
+
** 0 associated gene:
−
** Source: [[orthology-esiliculosus]]
+
** 2 reconstruction source(s) associated:
−
* Gene: [[Tiso_gene_1468]]
+
*** [[annotation-in-silico_annotation]]
−
** Source: [[orthology-esiliculosus]]
+
*** [[annotation-experimental_annotation]]
−
* Gene: [[Tiso_gene_2280]]
+
* [[RXN-16132]]
−
** Source: [[orthology-esiliculosus]]
+
** 0 associated gene:
−
* Gene: [[Tiso_gene_19638]]
+
** 2 reconstruction source(s) associated:
−
** Source: [[orthology-esiliculosus]]
+
*** [[annotation-experimental_annotation]]
−
* Gene: [[Tiso_gene_17593]]
+
*** [[annotation-in-silico_annotation]]
−
** Source: [[orthology-esiliculosus]]
+
* [[RXN-16134]]
−
* Gene: [[Tiso_gene_18235]]
+
** 1 associated gene(s):
−
** Source: [[orthology-esiliculosus]]
+
*** [[Tiso_gene_18566]]
−
* Gene: [[Tiso_gene_15594]]
+
** 2 reconstruction source(s) associated:
−
** Source: [[orthology-esiliculosus]]
+
*** [[annotation-experimental_annotation]]
−
* Gene: [[Tiso_gene_8652]]
+
*** [[annotation-in-silico_annotation]]
−
** Source: [[orthology-esiliculosus]]
+
* [[RXN-16135]]
−
* Gene: [[Tiso_gene_17919]]
+
** 0 associated gene:
−
** Source: [[orthology-esiliculosus]]
+
** 2 reconstruction source(s) associated:
−
* Gene: [[Tiso_gene_9227]]
+
*** [[annotation-experimental_annotation]]
−
** Source: [[orthology-esiliculosus]]
+
*** [[annotation-in-silico_annotation]]
−
== Pathways  ==
+
* [[RXN-16136]]
−
== Reconstruction information  ==
+
** 0 associated gene:
−
* Category: [[orthology]]
+
** 2 reconstruction source(s) associated:
−
** Source: [[orthology-esiliculosus]]
+
*** [[annotation-in-silico_annotation]]
−
*** Tool: [[pantograph]]
+
*** [[annotation-experimental_annotation]]
−
* Category: [[annotation]]
+
* [[RXN-16137]]
−
** Source: [[annotation-in-silico_annotation]]
+
** 5 associated gene(s):
−
*** Tool: [[pathwaytools]]
+
*** [[Tiso_gene_17451]]
−
** Source: [[annotation-experimental_annotation]]
+
*** [[Tiso_gene_15327]]
−
*** Tool: [[pathwaytools]]
+
*** [[Tiso_gene_3856]]
 +
*** [[Tiso_gene_10116]]
 +
*** [[Tiso_gene_3855]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[annotation-in-silico_annotation]]
 +
== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
+
{{#set: taxonomic range=TAX-33208}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R03219 R03219]
+
{{#set: taxonomic range=TAX-2759}}
−
* UNIPROT:
+
{{#set: common name=docosahexaenoate biosynthesis III (6-desaturase, mammals)}}
−
** [http://www.uniprot.org/uniprot/P21195 P21195]
+
{{#set: reaction found=14}}
−
** [http://www.uniprot.org/uniprot/Q10576 Q10576]
+
{{#set: total reaction=14}}
−
** [http://www.uniprot.org/uniprot/P16924 P16924]
+
{{#set: completion rate=100.0}}
−
** [http://www.uniprot.org/uniprot/P13674 P13674]
+
−
** [http://www.uniprot.org/uniprot/P05307 P05307]
+
−
** [http://www.uniprot.org/uniprot/P09102 P09102]
+
−
** [http://www.uniprot.org/uniprot/P07237 P07237]
+
−
** [http://www.uniprot.org/uniprot/Q922C8 Q922C8]
+
−
** [http://www.uniprot.org/uniprot/P04785 P04785]
+
−
** [http://www.uniprot.org/uniprot/P54001 P54001]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=prolyl_4-hydroxylase}}
+
−
{{#set: common name=ORF}}
+
−
{{#set: ec number=EC-1.14.11.2}}
+
−
{{#set: gene associated=Tiso_gene_4246|Tiso_gene_18689|Tiso_gene_18933|Tiso_gene_9035|Tiso_gene_3021|Tiso_gene_13008|Tiso_gene_9636|Tiso_gene_9165|Tiso_gene_6296|Tiso_gene_2158|Tiso_gene_16122|Tiso_gene_9455|Tiso_gene_16842|Tiso_gene_17823|Tiso_gene_18208|Tiso_gene_292|Tiso_gene_18145|Tiso_gene_9873|Tiso_gene_15328|Tiso_gene_1468|Tiso_gene_2280|Tiso_gene_19638|Tiso_gene_17593|Tiso_gene_18235|Tiso_gene_15594|Tiso_gene_8652|Tiso_gene_17919|Tiso_gene_9227}}
+
−
{{#set: in pathway=}}
+
−
{{#set: reconstruction category=orthology|annotation}}
+
−
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 19:41, 21 March 2018

Pathway PWY-7606

  • taxonomic range:
  • common name:
    • docosahexaenoate biosynthesis III (6-desaturase, mammals)
  • Synonym(s):

Reaction(s) found

14 reactions found over 14 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-7606&oldid=43260"