Difference between revisions of "RXN3O-9780"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-581 PWY-581] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-330...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN3O-9780 RXN3O-9780] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/E...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-581 PWY-581] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN3O-9780 RXN3O-9780] ==
* taxonomic range:
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* direction:
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
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** LEFT-TO-RIGHT
* common name:
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* ec number:
** indole-3-acetate biosynthesis II
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** [http://enzyme.expasy.org/EC/2.3.1 EC-2.3.1]
 
* Synonym(s):
 
* Synonym(s):
** auxin biosynthesis
 
** indole-3-acetic acid biosynthesis
 
** IAA de novo synthesis
 
** IAA biosynthesis II
 
  
== Reaction(s) found ==
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== Reaction Formula ==
'''3''' reactions found over '''13''' reactions in the full pathway
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* With identifiers:
* [[RXN-1404]]
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** 1 [[CO-A]][c] '''+''' 1 [[Palmitoyl-ACPs]][c] '''=>''' 1 [[PALMITYL-COA]][c] '''+''' 1 [[ACP]][c]
** 1 associated gene(s):
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* With common name(s):
*** [[Tiso_gene_10996]]
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** 1 coenzyme A[c] '''+''' 1 a palmitoyl-[acp][c] '''=>''' 1 palmitoyl-CoA[c] '''+''' 1 a holo-[acyl-carrier protein][c]
** 3 reconstruction source(s) associated:
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*** [[orthology-athaliana]]
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== Genes associated with this reaction  ==
*** [[annotation-in-silico_annotation]]
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== Pathways  ==
*** [[orthology-esiliculosus]]
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* [[PWY-7746]], mycobacterial sulfolipid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7746 PWY-7746]
* [[RXN-7567]]
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** '''2''' reactions found over '''8''' reactions in the full pathway
** 1 associated gene(s):
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* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
*** [[Tiso_gene_4032]]
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** '''31''' reactions found over '''31''' reactions in the full pathway
** 1 reconstruction source(s) associated:
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== Reconstruction information  ==
*** [[annotation-in-silico_annotation]]
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* Category: [[gap-filling]]
* [[RXNN-404]]
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** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
** 1 associated gene(s):
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*** Tool: [[meneco]]
*** [[Tiso_gene_13682]]
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**** Comment: [[added for gapfilling]]
** 1 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=AROMATIC-L-AMINO-ACID-DECARBOXYLASE-RXN AROMATIC-L-AMINO-ACID-DECARBOXYLASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-10139 RXN-10139]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12061 RXN-12061]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12062 RXN-12062]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12063 RXN-12063]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-1403 RXN-1403]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-1405 RXN-1405]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-1406 RXN-1406]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXNDQC-2 RXNDQC-2]
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* [http://metacyc.org/META/NEW-IMAGE?object=TRYPTOPHAN-AMINOTRANSFERASE-RXN TRYPTOPHAN-AMINOTRANSFERASE-RXN]
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== External links  ==
 
== External links  ==
* PLANTCYC : PWY-581
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{{#set: direction=LEFT-TO-RIGHT}}
* ARACYC:
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{{#set: ec number=EC-2.3.1}}
** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY-581 PWY-581]
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{{#set: in pathway=PWY-7746|PWY-5994}}
{{#set: taxonomic range=TAX-33090}}
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{{#set: reconstruction category=gap-filling}}
{{#set: common name=indole-3-acetate biosynthesis II}}
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{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
{{#set: common name=auxin biosynthesis|indole-3-acetic acid biosynthesis|IAA de novo synthesis|IAA biosynthesis II}}
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{{#set: reconstruction tool=meneco}}
{{#set: reaction found=3}}
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{{#set: reconstruction comment=added for gapfilling}}
{{#set: total reaction=13}}
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{{#set: completion rate=23.0}}
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Latest revision as of 19:42, 21 March 2018

Reaction RXN3O-9780

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 coenzyme A[c] + 1 a palmitoyl-[acp][c] => 1 palmitoyl-CoA[c] + 1 a holo-[acyl-carrier protein][c]

Genes associated with this reaction

Pathways

  • PWY-7746, mycobacterial sulfolipid biosynthesis: PWY-7746
    • 2 reactions found over 8 reactions in the full pathway
  • PWY-5994, palmitate biosynthesis I (animals and fungi): PWY-5994
    • 31 reactions found over 31 reactions in the full pathway

Reconstruction information

External links