Difference between revisions of "PWY-5531"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7741 RXN-7741] == * direction: ** LEFT-TO-RIGHT * common name: ** red_chlorophyll_catabolite_re...")
 
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5531 PWY-5531] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7741 RXN-7741] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5531 PWY-5531] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
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** red_chlorophyll_catabolite_reductase
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** 3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic)
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* ec number:
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** [http://enzyme.expasy.org/EC/1.3.7.12 EC-1.3.7.12]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''4''' reactions found over '''9''' reactions in the full pathway
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** 2 [[Reduced-ferredoxins]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[CPD-7063]][c] '''=>''' 2 [[Oxidized-ferredoxins]][c] '''+''' 1 [[CPD-7064]][c]
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* [[HEMN-RXN]]
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* With common name(s):
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** 5 associated gene(s):
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** 2 a reduced ferredoxin [iron-sulfur] cluster[c] '''+''' 2 H+[c] '''+''' 1 red chlorophyll catabolite[c] '''=>''' 2 an oxidized ferredoxin [iron-sulfur] cluster[c] '''+''' 1 primary fluorescent chlorophyll catabolite[c]
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*** [[Tiso_gene_5577]]
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*** [[Tiso_gene_18066]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_13365]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_13364]]
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* [[Tiso_gene_17975]]
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*** [[Tiso_gene_4004]]
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** IN-SILICO_ANNOTATION
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** 4 reconstruction source(s) associated:
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***AUTOMATED-NAME-MATCH
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*** [[orthology-athaliana]]
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== Pathways  ==
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*** [[annotation-in-silico_annotation]]
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* [[PWY-5098]], chlorophyll a degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5098 PWY-5098]
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*** [[orthology-synechocystis]]
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** '''1''' reactions found over '''6''' reactions in the full pathway
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*** [[orthology-esiliculosus]]
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* [[PWY-6927]], chlorophyll a degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6927 PWY-6927]
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* [[RXN-MG-PROTOPORPHYRIN-METHYLESTER-SYN]]
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** '''1''' reactions found over '''5''' reactions in the full pathway
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** 1 associated gene(s):
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== Reconstruction information  ==
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*** [[Tiso_gene_19451]]
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* [[annotation]]:
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** 5 reconstruction source(s) associated:
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** [[pathwaytools]]:
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*** [[annotation-experimental_annotation]]
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*** [[in-silico_annotation]]
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*** [[manual-primary_network]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
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* [[RXN1F-20]]
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** 3 associated gene(s):
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*** [[Tiso_gene_11960]]
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*** [[Tiso_gene_5993]]
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*** [[Tiso_gene_9870]]
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** 5 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[annotation-experimental_annotation]]
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*** [[manual-primary_network]]
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*** [[orthology-esiliculosus]]
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* [[UROGENDECARBOX-RXN]]
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** 4 associated gene(s):
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*** [[Tiso_gene_18743]]
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*** [[Tiso_gene_19684]]
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*** [[Tiso_gene_18744]]
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*** [[Tiso_gene_5173]]
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** 6 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-17485 RXN-17485]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8797 RXN-8797]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8798 RXN-8798]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8799 RXN-8799]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN0-6259 RXN0-6259]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24755 24755]
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{{#set: common name=3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic)}}
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* LIGAND-RXN:
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{{#set: reaction found=4}}
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** [http://www.genome.jp/dbget-bin/www_bget?R09032 R09032]
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{{#set: total reaction=9}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: completion rate=44.0}}
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{{#set: common name=red_chlorophyll_catabolite_reductase}}
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{{#set: ec number=EC-1.3.7.12}}
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{{#set: gene associated=Tiso_gene_17975}}
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{{#set: in pathway=PWY-5098|PWY-6927}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Latest revision as of 19:36, 21 March 2018

Pathway PWY-5531

  • taxonomic range:
  • common name:
    • 3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic)
  • Synonym(s):

Reaction(s) found

4 reactions found over 9 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-5531&oldid=42670"