Difference between revisions of "PWY-5129"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7391 PWY-7391] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-21...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5129 PWY-5129] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-3...")
 
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[[Category:Pathway]]
 
[[Category:Pathway]]
−
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7391 PWY-7391] ==
+
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5129 PWY-5129] ==
 
* taxonomic range:
 
* taxonomic range:
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
 
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-33208]
 
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
 
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
 
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
 
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
 
* common name:
 
* common name:
−
** isoprene biosynthesis II (engineered)
+
** sphingolipid biosynthesis (plants)
 
* Synonym(s):
 
* Synonym(s):
−
** isoprenoid pathway
+
** ceramide biosynthesis (plants)
−
** MVA pathway
+
  
 
== Reaction(s) found ==
 
== Reaction(s) found ==
−
  '''6''' reactions found over '''8''' reactions in the full pathway
+
  '''3''' reactions found over '''13''' reactions in the full pathway
−
* [[1.1.1.34-RXN]]
+
* [[3-DEHYDROSPHINGANINE-REDUCTASE-RXN]]
−
** 2 associated gene(s):
+
−
*** [[Tiso_gene_16182]]
+
−
*** [[Tiso_gene_17889]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[annotation-in-silico_annotation]]
+
−
* [[ACETYL-COA-ACETYLTRANSFER-RXN]]
+
−
** 3 associated gene(s):
+
−
*** [[Tiso_gene_16181]]
+
−
*** [[Tiso_gene_15327]]
+
−
*** [[Tiso_gene_17451]]
+
−
** 4 reconstruction source(s) associated:
+
−
*** [[orthology-athaliana]]
+
−
*** [[orthology-creinhardtii]]
+
−
*** [[orthology-synechocystis]]
+
−
*** [[orthology-esiliculosus]]
+
−
* [[DIPHOSPHOMEVALONTE-DECARBOXYLASE-RXN]]
+
−
** 1 associated gene(s):
+
−
*** [[Tiso_gene_4171]]
+
−
** 3 reconstruction source(s) associated:
+
−
*** [[orthology-athaliana]]
+
−
*** [[annotation-in-silico_annotation]]
+
−
*** [[orthology-esiliculosus]]
+
−
* [[HYDROXYMETHYLGLUTARYL-COA-SYNTHASE-RXN]]
+
−
** 3 associated gene(s):
+
−
*** [[Tiso_gene_9236]]
+
−
*** [[Tiso_gene_14303]]
+
−
*** [[Tiso_gene_8563]]
+
−
** 3 reconstruction source(s) associated:
+
−
*** [[orthology-athaliana]]
+
−
*** [[annotation-in-silico_annotation]]
+
−
*** [[orthology-esiliculosus]]
+
−
* [[IPPISOM-RXN]]
+
 
** 1 associated gene(s):
 
** 1 associated gene(s):
−
*** [[Tiso_gene_8653]]
+
*** [[Tiso_gene_18518]]
 
** 2 reconstruction source(s) associated:
 
** 2 reconstruction source(s) associated:
−
*** [[manual-primary_network]]
 
 
*** [[annotation-in-silico_annotation]]
 
*** [[annotation-in-silico_annotation]]
−
* [[MEVALONATE-KINASE-RXN]]
+
*** [[orthology-creinhardtii]]
 +
* [[SERINE-C-PALMITOYLTRANSFERASE-RXN]]
 
** 1 associated gene(s):
 
** 1 associated gene(s):
−
*** [[Tiso_gene_3811]]
+
*** [[Tiso_gene_10992]]
 
** 3 reconstruction source(s) associated:
 
** 3 reconstruction source(s) associated:
 
*** [[orthology-athaliana]]
 
*** [[orthology-athaliana]]
 
*** [[annotation-in-silico_annotation]]
 
*** [[annotation-in-silico_annotation]]
 
*** [[orthology-esiliculosus]]
 
*** [[orthology-esiliculosus]]
 +
* [[SPHINGANINE-KINASE-RXN]]
 +
** 2 associated gene(s):
 +
*** [[Tiso_gene_1163]]
 +
*** [[Tiso_gene_14560]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-creinhardtii]]
 
== Reaction(s) not found ==
 
== Reaction(s) not found ==
−
* [http://metacyc.org/META/NEW-IMAGE?object=4.2.3.27-RXN 4.2.3.27-RXN]
+
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11341 RXN-11341]
−
* [http://metacyc.org/META/NEW-IMAGE?object=PHOSPHOMEVALONATE-KINASE-RXN PHOSPHOMEVALONATE-KINASE-RXN]
+
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-14250 RXN-14250]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7792 RXN-7792]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7793 RXN-7793]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7795 RXN-7795]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7796 RXN-7796]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7798 RXN-7798]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7799 RXN-7799]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7801 RXN-7801]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN3O-1380 RXN3O-1380]
 
== External links  ==
 
== External links  ==
−
{{#set: taxonomic range=TAX-2157}}
+
* ARACYC:
−
{{#set: taxonomic range=TAX-33208}}
+
** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY-5129 PWY-5129]
−
{{#set: taxonomic range=TAX-4751}}
+
−
{{#set: taxonomic range=TAX-2}}
+
 
{{#set: taxonomic range=TAX-33090}}
 
{{#set: taxonomic range=TAX-33090}}
−
{{#set: common name=isoprene biosynthesis II (engineered)}}
+
{{#set: common name=sphingolipid biosynthesis (plants)}}
−
{{#set: common name=isoprenoid pathway|MVA pathway}}
+
{{#set: common name=ceramide biosynthesis (plants)}}
−
{{#set: reaction found=6}}
+
{{#set: reaction found=3}}
−
{{#set: total reaction=8}}
+
{{#set: total reaction=13}}
−
{{#set: completion rate=75.0}}
+
{{#set: completion rate=23.0}}

Latest revision as of 19:47, 21 March 2018

Pathway PWY-5129

  • taxonomic range:
  • common name:
    • sphingolipid biosynthesis (plants)
  • Synonym(s):
    • ceramide biosynthesis (plants)

Reaction(s) found

3 reactions found over 13 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-5129&oldid=43765"