Difference between revisions of "Tiso gene 8723"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.3.1.165-RXN 2.3.1.165-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase...")
(Created page with "Category:Gene == Gene Tiso_gene_8723 == * right end position: ** 4472 * transcription direction: ** POSITIVE * left end position: ** 1 * centisome position: ** 1.004520400...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.3.1.165-RXN 2.3.1.165-RXN] ==
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== Gene Tiso_gene_8723 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 4472
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* common name:
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* transcription direction:
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** polyketide_synthase
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** POSITIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/2.3.1.165 EC-2.3.1.165]
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** 1
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* centisome position:
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** 1.004520400e-2
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[GPH-RXN]]
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** 3 [[MALONYL-COA]][c] '''+''' 3 [[PROTON]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[ACETYL-COA]][c] '''=>''' 3 [[CARBON-DIOXIDE]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[NADP]][c] '''+''' 4 [[CO-A]][c] '''+''' 1 [[CPD-637]][c]
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* With common name(s):
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** 3 malonyl-CoA[c] '''+''' 3 H+[c] '''+''' 1 NADPH[c] '''+''' 1 acetyl-CoA[c] '''=>''' 3 CO2[c] '''+''' 1 H2O[c] '''+''' 1 NADP+[c] '''+''' 4 coenzyme A[c] '''+''' 1 6-methylsalicylate[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_136]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_500]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_13394]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_135]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_10876]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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*** Assignment: automated-name-match
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== Pathways  ==
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* Reaction: [[QUINOPRIBOTRANS-RXN]]
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* [[PWY-7490]], patulin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7490 PWY-7490]
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** '''1''' reactions found over '''15''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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== Pathways associated ==
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* [[PWY-5316]]
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* [[PWY-5653]]
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* [[PYRIDNUCSYN-PWY]]
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* [[PWY-181]]
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* [[PWY-7342]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=4472}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12240 12240]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=1}}
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** [http://www.genome.jp/dbget-bin/www_bget?R07253 R07253]
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{{#set: centisome position=1.004520400e-2}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=GPH-RXN|QUINOPRIBOTRANS-RXN}}
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{{#set: common name=polyketide_synthase}}
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{{#set: pathway associated=PWY-5316|PWY-5653|PYRIDNUCSYN-PWY|PWY-181|PWY-7342}}
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{{#set: ec number=EC-2.3.1.165}}
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{{#set: gene associated=Tiso_gene_136|Tiso_gene_500|Tiso_gene_13394|Tiso_gene_135|Tiso_gene_10876}}
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{{#set: in pathway=PWY-7490}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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Latest revision as of 19:48, 21 March 2018

Gene Tiso_gene_8723

  • right end position:
    • 4472
  • transcription direction:
    • POSITIVE
  • left end position:
    • 1
  • centisome position:
    • 1.004520400e-2
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_8723&oldid=43825"