Difference between revisions of "Tiso gene 4277"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLURS-RXN GLURS-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** glutamyl-trna_synthe...")
(Created page with "Category:Gene == Gene Tiso_gene_4277 == * right end position: ** 13853 * transcription direction: ** NEGATIVE * left end position: ** 8211 * centisome position: ** 47.5366...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLURS-RXN GLURS-RXN] ==
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== Gene Tiso_gene_4277 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 13853
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* common name:
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* transcription direction:
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** ORF
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** NEGATIVE
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** glutamyl-trna_synthetase
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* left end position:
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* ec number:
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** 8211
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** [http://enzyme.expasy.org/EC/6.1.1.17 EC-6.1.1.17]
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* centisome position:
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** 47.536617   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[3.4.21.53-RXN]]
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** 1 [[GLT]][c] '''+''' 1 [[GLT-tRNAs]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[Charged-GLT-tRNAs]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c]
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* With common name(s):
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** 1 L-glutamate[c] '''+''' 1 a tRNAglu[c] '''+''' 1 ATP[c] '''=>''' 1 an L-glutamyl-[tRNAGlu][c] '''+''' 1 AMP[c] '''+''' 1 diphosphate[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_5379]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_5046]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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== Pathways  ==
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* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
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** '''21''' reactions found over '''21''' reactions in the full pathway
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* [[PWY-5188]], tetrapyrrole biosynthesis I (from glutamate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5188 PWY-5188]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: automated-name-match
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== Pathways associated ==
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=13853}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23540 23540]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: left end position=8211}}
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** [http://www.genome.jp/dbget-bin/www_bget?R05578 R05578]
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{{#set: centisome position=47.536617    }}
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* UNIPROT:
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{{#set: reaction associated=3.4.21.53-RXN}}
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** [http://www.uniprot.org/uniprot/P47700 P47700]
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** [http://www.uniprot.org/uniprot/O52914 O52914]
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** [http://www.uniprot.org/uniprot/P43818 P43818]
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** [http://www.uniprot.org/uniprot/O26157 O26157]
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** [http://www.uniprot.org/uniprot/Q9ZLJ1 Q9ZLJ1]
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** [http://www.uniprot.org/uniprot/O25360 O25360]
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** [http://www.uniprot.org/uniprot/O51345 O51345]
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** [http://www.uniprot.org/uniprot/Q9Z7Z3 Q9Z7Z3]
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** [http://www.uniprot.org/uniprot/P96551 P96551]
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** [http://www.uniprot.org/uniprot/O67271 O67271]
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** [http://www.uniprot.org/uniprot/O83679 O83679]
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** [http://www.uniprot.org/uniprot/Q9ZLZ7 Q9ZLZ7]
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** [http://www.uniprot.org/uniprot/Q9PP78 Q9PP78]
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** [http://www.uniprot.org/uniprot/Q9CDZ7 Q9CDZ7]
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** [http://www.uniprot.org/uniprot/O84451 O84451]
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** [http://www.uniprot.org/uniprot/Q9X2I8 Q9X2I8]
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** [http://www.uniprot.org/uniprot/Q9JWT4 Q9JWT4]
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** [http://www.uniprot.org/uniprot/Q9ZDK3 Q9ZDK3]
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** [http://www.uniprot.org/uniprot/Q9X172 Q9X172]
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** [http://www.uniprot.org/uniprot/Q58772 Q58772]
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** [http://www.uniprot.org/uniprot/Q9ZCT8 Q9ZCT8]
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** [http://www.uniprot.org/uniprot/P59690 P59690]
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** [http://www.uniprot.org/uniprot/Q43768 Q43768]
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** [http://www.uniprot.org/uniprot/Q43794 Q43794]
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** [http://www.uniprot.org/uniprot/P46655 P46655]
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** [http://www.uniprot.org/uniprot/P48525 P48525]
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** [http://www.uniprot.org/uniprot/P75114 P75114]
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** [http://www.uniprot.org/uniprot/Q49061 Q49061]
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** [http://www.uniprot.org/uniprot/P22249 P22249]
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** [http://www.uniprot.org/uniprot/P22250 P22250]
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** [http://www.uniprot.org/uniprot/P04805 P04805]
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** [http://www.uniprot.org/uniprot/P07814 P07814]
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** [http://www.uniprot.org/uniprot/P15189 P15189]
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** [http://www.uniprot.org/uniprot/O65253 O65253]
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** [http://www.uniprot.org/uniprot/O68055 O68055]
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** [http://www.uniprot.org/uniprot/O68142 O68142]
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** [http://www.uniprot.org/uniprot/O86528 O86528]
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** [http://www.uniprot.org/uniprot/O13775 O13775]
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** [http://www.uniprot.org/uniprot/Q9ZFA3 Q9ZFA3]
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** [http://www.uniprot.org/uniprot/O82462 O82462]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=ORF}}
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{{#set: common name=glutamyl-trna_synthetase}}
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{{#set: ec number=EC-6.1.1.17}}
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{{#set: gene associated=Tiso_gene_5379|Tiso_gene_5046}}
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{{#set: in pathway=TRNA-CHARGING-PWY|PWY-5188}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|manual-primary_network|annotation-experimental_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 19:48, 21 March 2018

Gene Tiso_gene_4277

  • right end position:
    • 13853
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 8211
  • centisome position:
    • 47.536617
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_4277&oldid=43926"