Difference between revisions of "PAPS"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN] == * direction: ** LEFT-TO-RIG...")
 
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=PAPS PAPS] == * smiles: ** C(OP(=O)([O-])OS(=O)(=O)[O-])C1(C(OP(=O)([O-])[O-])C(O)C(O1)N3(C=NC2...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=PAPS PAPS] ==
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* direction:
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* smiles:
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** LEFT-TO-RIGHT
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** C(OP(=O)([O-])OS(=O)(=O)[O-])C1(C(OP(=O)([O-])[O-])C(O)C(O1)N3(C=NC2(C(N)=NC=NC=23)))
 
* common name:
 
* common name:
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** drap_deaminase
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** 3'-phosphoadenylyl-sulfate
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** pseudouridine_synthase_family_protein
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* inchi key:
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** ORF
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** InChIKey=GACDQMDRPRGCTN-KQYNXXCUSA-J
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** pseudouridine_synthase
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* molecular weight:
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** Transmembrane_protein
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** 503.23   
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** trna-pseudouridine_synthasei
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** ribosomal_large_subunit_pseudouridine_synthase_d
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** trna_pseudouridinesynthase
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** trna_pseudouridine_synthase
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** pseudouridylate_synthase
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** pseudouridine_synthase_rlu_family_protein
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−
** protein_pus7
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** trna_pseudouridine_synthase_a
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−
** pseudouridine
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** rna_pseudouridylate_synthase_domain-containing_protein_1
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** pseudouridine_synthase_1-like_protein
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** trna_pseudouridine_synthase_d
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−
* ec number:
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−
** [http://enzyme.expasy.org/EC/5.4.99.12 EC-5.4.99.12]
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* Synonym(s):
 
* Synonym(s):
 +
** phosphoadenosine-5'-phosphosulfate
 +
** PAPS
 +
** phosphoadenosine phosphosulfate
 +
** 3'-phosphoadenosine-5'-phosphosulfate
 +
** 3'-phosphoadenylyl sulfate
 +
** 3'-phospho-5'-adenylyl sulfate
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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* [[RXN-18303]]
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** 1 [[tRNA-uridine-38-40]][c] '''=>''' 1 [[tRNA-pseudouridine-38-40]][c]
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* [[RXN-18301]]
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* With common name(s):
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* [[RXN-10614]]
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** 1 a uridine38-40 in tRNA[c] '''=>''' 1 a pseudouridine38-40 in tRNA[c]
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* [[RXN-10615]]
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* [[RXN6666-9]]
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== Genes associated with this reaction  ==
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* [[GALACTOSYLCERAMIDE-SULFOTRANSFERASE-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[RXN-11059]]
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* [[Tiso_gene_2851]]
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* [[RXN-10777]]
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** IN-SILICO_ANNOTATION
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* [[RXN-10782]]
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***EC-NUMBER
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* [[RXN-11058]]
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* [[Tiso_gene_18184]]
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== Reaction(s) known to produce the compound ==
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** IN-SILICO_ANNOTATION
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* [[AASP]]
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***EC-NUMBER
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== Reaction(s) of unknown directionality ==
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* [[Tiso_gene_10567]]
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* [[PAPSPAPtm]]
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** IN-SILICO_ANNOTATION
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* [[PROTEIN-TYROSINE-SULFOTRANSFERASE-RXN]]
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***EC-NUMBER
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* [[ADENYLYLSULFKIN-RXN]]
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* [[Tiso_gene_13557]]
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* [[ARYL-SULFOTRANSFERASE-RXN]]
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** IN-SILICO_ANNOTATION
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* [[1.8.4.8-RXN]]
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***EC-NUMBER
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* [[RXN-15589]]
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** [[pantograph]]-[[esiliculosus]]
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* [[RXN-15588]]
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* [[Tiso_gene_18936]]
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* [[RXN-17203]]
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** IN-SILICO_ANNOTATION
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* [[RXN-15587]]
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***EC-NUMBER
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* [[R163-RXN]]
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** [[pantograph]]-[[esiliculosus]]
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* [[PAPSPAPthr]]
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* [[Tiso_gene_9833]]
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−
** IN-SILICO_ANNOTATION
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−
***EC-NUMBER
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−
* [[Tiso_gene_3166]]
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−
** IN-SILICO_ANNOTATION
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−
***EC-NUMBER
+
−
* [[Tiso_gene_17745]]
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−
** IN-SILICO_ANNOTATION
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−
***EC-NUMBER
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−
* [[Tiso_gene_5234]]
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** IN-SILICO_ANNOTATION
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−
***EC-NUMBER
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−
** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_18028]]
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** IN-SILICO_ANNOTATION
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−
***EC-NUMBER
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−
* [[Tiso_gene_19622]]
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** IN-SILICO_ANNOTATION
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−
***AUTOMATED-NAME-MATCH
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** EXPERIMENTAL_ANNOTATION
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−
***AUTOMATED-NAME-MATCH
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_178]]
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** IN-SILICO_ANNOTATION
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−
***EC-NUMBER
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−
* [[Tiso_gene_17799]]
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** IN-SILICO_ANNOTATION
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−
***EC-NUMBER
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−
* [[Tiso_gene_17798]]
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** IN-SILICO_ANNOTATION
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−
***EC-NUMBER
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* [[Tiso_gene_4703]]
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** IN-SILICO_ANNOTATION
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−
***EC-NUMBER
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−
* [[Tiso_gene_18959]]
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** IN-SILICO_ANNOTATION
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−
***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_11842]]
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** IN-SILICO_ANNOTATION
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−
***EC-NUMBER
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−
* [[Tiso_gene_3970]]
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** IN-SILICO_ANNOTATION
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−
***EC-NUMBER
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−
* [[Tiso_gene_7417]]
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** IN-SILICO_ANNOTATION
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−
***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_12635]]
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** IN-SILICO_ANNOTATION
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−
***EC-NUMBER
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−
** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_12093]]
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** IN-SILICO_ANNOTATION
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−
***EC-NUMBER
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−
* [[Tiso_gene_4020]]
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** IN-SILICO_ANNOTATION
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−
***EC-NUMBER
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−
* [[Tiso_gene_19667]]
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** IN-SILICO_ANNOTATION
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−
***EC-NUMBER
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−
** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_18988]]
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** IN-SILICO_ANNOTATION
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−
***EC-NUMBER
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−
** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_4021]]
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** IN-SILICO_ANNOTATION
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−
***EC-NUMBER
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−
* [[Tiso_gene_3154]]
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** IN-SILICO_ANNOTATION
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−
***EC-NUMBER
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−
* [[Tiso_gene_582]]
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−
** IN-SILICO_ANNOTATION
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−
***EC-NUMBER
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−
* [[Tiso_gene_7584]]
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** IN-SILICO_ANNOTATION
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−
***EC-NUMBER
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−
* [[Tiso_gene_16656]]
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−
** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_1548]]
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** IN-SILICO_ANNOTATION
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−
***EC-NUMBER
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−
* [[Tiso_gene_18987]]
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** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_5651]]
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** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_1134]]
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** IN-SILICO_ANNOTATION
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−
***EC-NUMBER
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−
* [[Tiso_gene_15274]]
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−
** IN-SILICO_ANNOTATION
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−
***EC-NUMBER
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−
* [[Tiso_gene_2850]]
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−
** IN-SILICO_ANNOTATION
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−
***EC-NUMBER
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−
* [[Tiso_gene_2988]]
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−
** IN-SILICO_ANNOTATION
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−
***EC-NUMBER
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−
* [[Tiso_gene_11913]]
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−
** IN-SILICO_ANNOTATION
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−
***AUTOMATED-NAME-MATCH
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−
** EXPERIMENTAL_ANNOTATION
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−
***AUTOMATED-NAME-MATCH
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−
** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_16727]]
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** IN-SILICO_ANNOTATION
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−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
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−
== Pathways  ==
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−
== Reconstruction information  ==
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−
* [[orthology]]:
+
−
** [[pantograph]]:
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−
*** [[esiliculosus]]
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−
* [[annotation]]:
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−
** [[pathwaytools]]:
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−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
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* CAS : 482-67-7
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** [http://www.genome.jp/dbget-bin/www_bget?R03020 R03020]
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* BIGG : paps
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* UNIPROT:
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* PUBCHEM:
−
** [http://www.uniprot.org/uniprot/Q59069 Q59069]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=46926099 46926099]
−
** [http://www.uniprot.org/uniprot/P47428 P47428]
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* KNAPSACK : C00007446
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** [http://www.uniprot.org/uniprot/P45291 P45291]
+
* HMDB : HMDB01134
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** [http://www.uniprot.org/uniprot/Q45557 Q45557]
+
* LIGAND-CPD:
−
** [http://www.uniprot.org/uniprot/Q50291 Q50291]
+
** [http://www.genome.jp/dbget-bin/www_bget?C00053 C00053]
−
** [http://www.uniprot.org/uniprot/P53167 P53167]
+
* CHEBI:
−
** [http://www.uniprot.org/uniprot/Q12211 Q12211]
+
** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=58339 58339]
−
** [http://www.uniprot.org/uniprot/P73295 P73295]
+
* METABOLIGHTS : MTBLC58339
−
** [http://www.uniprot.org/uniprot/P07649 P07649]
+
{{#set: smiles=C(OP(=O)([O-])OS(=O)(=O)[O-])C1(C(OP(=O)([O-])[O-])C(O)C(O1)N3(C=NC2(C(N)=NC=NC=23)))}}
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: common name=3'-phosphoadenylyl-sulfate}}
−
{{#set: common name=drap_deaminase}}
+
{{#set: inchi key=InChIKey=GACDQMDRPRGCTN-KQYNXXCUSA-J}}
−
{{#set: common name=pseudouridine_synthase_family_protein}}
+
{{#set: molecular weight=503.23    }}
−
{{#set: common name=ORF}}
+
{{#set: common name=phosphoadenosine-5'-phosphosulfate|PAPS|phosphoadenosine phosphosulfate|3'-phosphoadenosine-5'-phosphosulfate|3'-phosphoadenylyl sulfate|3'-phospho-5'-adenylyl sulfate}}
−
{{#set: common name=pseudouridine_synthase}}
+
{{#set: consumed by=RXN-18303|RXN-18301|RXN-10614|RXN-10615|RXN6666-9|GALACTOSYLCERAMIDE-SULFOTRANSFERASE-RXN|RXN-11059|RXN-10777|RXN-10782|RXN-11058}}
−
{{#set: common name=Transmembrane_protein}}
+
{{#set: produced by=AASP}}
−
{{#set: common name=trna-pseudouridine_synthasei}}
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{{#set: reversible reaction associated=PAPSPAPtm|PROTEIN-TYROSINE-SULFOTRANSFERASE-RXN|ADENYLYLSULFKIN-RXN|ARYL-SULFOTRANSFERASE-RXN|1.8.4.8-RXN|RXN-15589|RXN-15588|RXN-17203|RXN-15587|R163-RXN|PAPSPAPthr}}
−
{{#set: common name=ribosomal_large_subunit_pseudouridine_synthase_d}}
+
−
{{#set: common name=trna_pseudouridinesynthase}}
+
−
{{#set: common name=trna_pseudouridine_synthase}}
+
−
{{#set: common name=pseudouridylate_synthase}}
+
−
{{#set: common name=pseudouridine_synthase_rlu_family_protein}}
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−
{{#set: common name=protein_pus7}}
+
−
{{#set: common name=trna_pseudouridine_synthase_a}}
+
−
{{#set: common name=pseudouridine}}
+
−
{{#set: common name=rna_pseudouridylate_synthase_domain-containing_protein_1}}
+
−
{{#set: common name=pseudouridine_synthase_1-like_protein}}
+
−
{{#set: common name=trna_pseudouridine_synthase_d}}
+
−
{{#set: ec number=EC-5.4.99.12}}
+
−
{{#set: gene associated=Tiso_gene_2851|Tiso_gene_18184|Tiso_gene_10567|Tiso_gene_13557|Tiso_gene_18936|Tiso_gene_9833|Tiso_gene_3166|Tiso_gene_17745|Tiso_gene_5234|Tiso_gene_18028|Tiso_gene_19622|Tiso_gene_178|Tiso_gene_17799|Tiso_gene_17798|Tiso_gene_4703|Tiso_gene_18959|Tiso_gene_11842|Tiso_gene_3970|Tiso_gene_7417|Tiso_gene_12635|Tiso_gene_12093|Tiso_gene_4020|Tiso_gene_19667|Tiso_gene_18988|Tiso_gene_4021|Tiso_gene_3154|Tiso_gene_582|Tiso_gene_7584|Tiso_gene_16656|Tiso_gene_1548|Tiso_gene_18987|Tiso_gene_5651|Tiso_gene_1134|Tiso_gene_15274|Tiso_gene_2850|Tiso_gene_2988|Tiso_gene_11913|Tiso_gene_16727}}
+
−
{{#set: in pathway=}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=esiliculosus}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Latest revision as of 20:36, 21 March 2018

Metabolite PAPS

  • smiles:
    • C(OP(=O)([O-])OS(=O)(=O)[O-])C1(C(OP(=O)([O-])[O-])C(O)C(O1)N3(C=NC2(C(N)=NC=NC=23)))
  • common name:
    • 3'-phosphoadenylyl-sulfate
  • inchi key:
    • InChIKey=GACDQMDRPRGCTN-KQYNXXCUSA-J
  • molecular weight:
    • 503.23
  • Synonym(s):
    • phosphoadenosine-5'-phosphosulfate
    • PAPS
    • phosphoadenosine phosphosulfate
    • 3'-phosphoadenosine-5'-phosphosulfate
    • 3'-phosphoadenylyl sulfate
    • 3'-phospho-5'-adenylyl sulfate

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

  • CAS : 482-67-7
  • BIGG : paps
  • PUBCHEM:
  • KNAPSACK : C00007446
  • HMDB : HMDB01134
  • LIGAND-CPD:
  • CHEBI:
  • METABOLIGHTS : MTBLC58339
"C(OP(=O)([O-])OS(=O)(=O)[O-])C1(C(OP(=O)([O-])[O-])C(O)C(O1)N3(C=NC2(C(N)=NC=NC=23)))" cannot be used as a page name in this wiki.




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