Difference between revisions of "RXN-12978"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Gene == Gene Tiso_gene_5253 == * right end position: ** 13653 * transcription direction: ** POSITIVE * left end position: ** 11000 * centisome position: ** 80.180...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12978 RXN-12978] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase ** long...")
 
Line 1: Line 1:
−
[[Category:Gene]]
+
[[Category:Reaction]]
−
== Gene Tiso_gene_5253 ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12978 RXN-12978] ==
−
* right end position:
+
* direction:
−
** 13653
+
** LEFT-TO-RIGHT
−
* transcription direction:
+
* common name:
−
** POSITIVE
+
** polyketide_synthase
−
* left end position:
+
** long_chain_acyl-_synthetase
−
** 11000
+
** acyl-_synthetase
−
* centisome position:
+
** ORF
−
** 80.18077   
+
* ec number:
 +
** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reactions associated ==
+
== Reaction Formula ==
−
* Reaction: [[3.4.17.11-RXN]]
+
* With identifiers:
 +
** 1 [[CO-A]][c] '''+''' 1 [[5Z8Z11Z14Z17Z-EICOSAPENTAENOATE]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[CPD-14018]][c] '''+''' 1 [[AMP]][c]
 +
* With common name(s):
 +
** 1 coenzyme A[c] '''+''' 1 icosapentaenoate[c] '''+''' 1 ATP[c] '''=>''' 1 diphosphate[c] '''+''' 1 icosapentaenoyl-CoA[c] '''+''' 1 AMP[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Tiso_gene_136]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_13394]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_7855]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_348]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_135]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_10876]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_9394]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_500]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_4191]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
== Pathways  ==
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
−
*** Assignment: automated-name-match
+
*** Tool: [[pathwaytools]]
−
== Pathways associated ==
+
 
== External links  ==
 
== External links  ==
−
{{#set: right end position=13653}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: transcription direction=POSITIVE}}
+
{{#set: common name=polyketide_synthase}}
−
{{#set: left end position=11000}}
+
{{#set: common name=long_chain_acyl-_synthetase}}
−
{{#set: centisome position=80.18077    }}
+
{{#set: common name=acyl-_synthetase}}
−
{{#set: reaction associated=3.4.17.11-RXN}}
+
{{#set: common name=ORF}}
 +
{{#set: ec number=EC-6.2.1.3}}
 +
{{#set: gene associated=Tiso_gene_136|Tiso_gene_13394|Tiso_gene_7855|Tiso_gene_348|Tiso_gene_135|Tiso_gene_10876|Tiso_gene_9394|Tiso_gene_500|Tiso_gene_4191}}
 +
{{#set: in pathway=}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:54, 21 March 2018

Reaction RXN-12978

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • polyketide_synthase
    • long_chain_acyl-_synthetase
    • acyl-_synthetase
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-12978&oldid=44482"