Difference between revisions of "Tiso gene 15047"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PROLINE--TRNA-LIGASE-RXN PROLINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name:...")
(Created page with "Category:Gene == Gene Tiso_gene_15047 == * right end position: ** 1538 * transcription direction: ** NEGATIVE * left end position: ** 181 * centisome position: ** 3.433883...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PROLINE--TRNA-LIGASE-RXN PROLINE--TRNA-LIGASE-RXN] ==
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== Gene Tiso_gene_15047 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 1538
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* common name:
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* transcription direction:
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** ORF
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** NEGATIVE
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** prolyl-trna_synthetase
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* left end position:
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* ec number:
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** 181
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** [http://enzyme.expasy.org/EC/6.1.1.15 EC-6.1.1.15]
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* centisome position:
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** 3.4338837   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[PHOSPHOLIPASE-A2-RXN]]
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** 1 [[PRO-tRNAs]][c] '''+''' 1 [[PRO]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[Charged-PRO-tRNAs]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 a tRNApro[c] '''+''' 1 L-proline[c] '''+''' 1 ATP[c] '''=>''' 1 AMP[c] '''+''' 1 diphosphate[c] '''+''' 1 an L-prolyl-[tRNApro][c]
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* Reaction: [[RXN-15065]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: ec-number
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN-15067]]
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* Gene: [[Tiso_gene_11974]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-15068]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-16138]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-16139]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-17735]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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* Reaction: [[RXN-17736]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_14791]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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* Reaction: [[RXN0-6725]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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== Pathways  ==
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* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
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** '''21''' reactions found over '''21''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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== Pathways associated ==
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* [[PWY66-397]]
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* [[PWY-6803]]
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* [[PWY-7409]]
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* [[PWY66-394]]
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* [[PWY66-395]]
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* [[PWY-7783]]
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* [[PWY-7417]]
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* [[PWY-7416]]
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* [[LIPASYN-PWY]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=1538}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14305 14305]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: left end position=181}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03661 R03661]
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{{#set: centisome position=3.4338837    }}
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* UNIPROT:
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{{#set: reaction associated=PHOSPHOLIPASE-A2-RXN|RXN-15065|RXN-15067|RXN-15068|RXN-16138|RXN-16139|RXN-17735|RXN-17736|RXN0-6725}}
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** [http://www.uniprot.org/uniprot/O51363 O51363]
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{{#set: pathway associated=PWY66-397|PWY-6803|PWY-7409|PWY66-394|PWY66-395|PWY-7783|PWY-7417|PWY-7416|LIPASYN-PWY}}
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** [http://www.uniprot.org/uniprot/O58734 O58734]
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** [http://www.uniprot.org/uniprot/Q9ZMJ6 Q9ZMJ6]
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** [http://www.uniprot.org/uniprot/P43830 P43830]
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** [http://www.uniprot.org/uniprot/P47525 P47525]
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** [http://www.uniprot.org/uniprot/O26708 O26708]
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** [http://www.uniprot.org/uniprot/Q9JU09 Q9JU09]
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** [http://www.uniprot.org/uniprot/Q58635 Q58635]
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** [http://www.uniprot.org/uniprot/P56124 P56124]
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** [http://www.uniprot.org/uniprot/O83195 O83195]
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** [http://www.uniprot.org/uniprot/Q9Z851 Q9Z851]
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** [http://www.uniprot.org/uniprot/O31755 O31755]
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** [http://www.uniprot.org/uniprot/P36431 P36431]
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** [http://www.uniprot.org/uniprot/Q9ZDE7 Q9ZDE7]
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** [http://www.uniprot.org/uniprot/Q9PHX1 Q9PHX1]
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** [http://www.uniprot.org/uniprot/Q9CDT4 Q9CDT4]
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** [http://www.uniprot.org/uniprot/Q9WYY4 Q9WYY4]
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** [http://www.uniprot.org/uniprot/P75382 P75382]
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** [http://www.uniprot.org/uniprot/Q49090 Q49090]
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** [http://www.uniprot.org/uniprot/P07814 P07814]
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** [http://www.uniprot.org/uniprot/P16659 P16659]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=ORF}}
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{{#set: common name=prolyl-trna_synthetase}}
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{{#set: ec number=EC-6.1.1.15}}
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{{#set: gene associated=Tiso_gene_11974|Tiso_gene_14791}}
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{{#set: in pathway=TRNA-CHARGING-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 19:55, 21 March 2018

Gene Tiso_gene_15047

  • right end position:
    • 1538
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 181
  • centisome position:
    • 3.4338837
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_15047&oldid=44610"