Difference between revisions of "Tiso gene 5609"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13602 RXN-13602] == * direction: ** LEFT-TO-RIGHT * common name: ** linustatin β-diglucosi...")
(Created page with "Category:Gene == Gene Tiso_gene_5609 == * right end position: ** 8593 * transcription direction: ** NEGATIVE * left end position: ** 6074 * centisome position: ** 46.18660...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13602 RXN-13602] ==
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== Gene Tiso_gene_5609 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 8593
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* common name:
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* transcription direction:
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** linustatin β-diglucosidase
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** NEGATIVE
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** beta-glucosidase-like_chloroplastic
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* left end position:
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** ORF
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** 6074
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** low_quality_protein:_beta-glucosidase-like_chloroplastic-like
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* centisome position:
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** beta_glucosidase
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** 46.186604   
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* ec number:
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** [http://enzyme.expasy.org/EC/3.2.1.21 EC-3.2.1.21]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[IDS1]]
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** 1 [[WATER]][c] '''+''' 1 [[CPD-14594]][c] '''=>''' 1 [[Glucopyranose]][c] '''+''' 1 [[LINAMARIN]][c]
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** Source: [[orthology-creinhardtii]]
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* With common name(s):
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* Reaction: [[IDS2]]
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** 1 H2O[c] '''+''' 1 linustatin[c] '''=>''' 1 D-glucopyranose[c] '''+''' 1 linamarin[c]
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** Source: [[orthology-creinhardtii]]
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* Reaction: [[ISPH2-RXN]]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_2843]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_3467]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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*** Assignment: ec-number
 
** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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*** Assignment: ec-number
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* Gene: [[Tiso_gene_6188]]
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** Source: [[orthology-athaliana]]
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** Source: [[annotation-in-silico_annotation]]
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** Source: [[orthology-synechocystis]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_2344]]
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** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_5836]]
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* Reaction: [[R07219]]
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** Source: [[orthology-synechocystis]]
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* Reaction: [[RXN0-884]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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*** Assignment: ec-number
 
** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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*** Assignment: ec-number
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* Gene: [[Tiso_gene_6007]]
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** Source: [[annotation-in-silico_annotation]]
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−
*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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−
*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_6497]]
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** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_10001]]
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== Pathways associated ==
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** Source: [[orthology-esiliculosus]]
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* [[NONMEVIPP-PWY]]
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* Gene: [[Tiso_gene_6187]]
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* [[PWY-7560]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_13306]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_15067]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_13305]]
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** Source: [[annotation-in-silico_annotation]]
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−
*** Assignment: EC-NUMBER
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−
** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_15066]]
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−
** Source: [[annotation-in-silico_annotation]]
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−
*** Assignment: EC-NUMBER
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−
** Source: [[annotation-experimental_annotation]]
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−
*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_8669]]
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−
** Source: [[annotation-in-silico_annotation]]
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−
*** Assignment: EC-NUMBER
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−
** Source: [[annotation-experimental_annotation]]
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−
*** Assignment: EC-NUMBER
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== Pathways ==
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* [[PWY-7091]], linustatin bioactivation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7091 PWY-7091]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: right end position=8593}}
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{{#set: common name=linustatin β-diglucosidase}}
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{{#set: transcription direction=NEGATIVE}}
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{{#set: common name=beta-glucosidase-like_chloroplastic}}
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{{#set: left end position=6074}}
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{{#set: common name=ORF}}
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{{#set: centisome position=46.186604    }}
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{{#set: common name=low_quality_protein:_beta-glucosidase-like_chloroplastic-like}}
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{{#set: reaction associated=IDS1|IDS2|ISPH2-RXN|R07219|RXN0-884}}
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{{#set: common name=beta_glucosidase}}
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{{#set: pathway associated=NONMEVIPP-PWY|PWY-7560}}
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{{#set: ec number=EC-3.2.1.21}}
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{{#set: gene associated=Tiso_gene_2843|Tiso_gene_3467|Tiso_gene_6188|Tiso_gene_2344|Tiso_gene_5836|Tiso_gene_6007|Tiso_gene_6497|Tiso_gene_10001|Tiso_gene_6187|Tiso_gene_13306|Tiso_gene_15067|Tiso_gene_13305|Tiso_gene_15066|Tiso_gene_8669}}
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{{#set: in pathway=PWY-7091}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 19:56, 21 March 2018

Gene Tiso_gene_5609

  • right end position:
    • 8593
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 6074
  • centisome position:
    • 46.186604
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_5609&oldid=44727"