Difference between revisions of "RXN-15122"
From metabolic_network
(Created page with "Category:Gene == Gene Tiso_gene_12651 == * right end position: ** 6594 * transcription direction: ** NEGATIVE * left end position: ** 556 * centisome position: ** 8.175268...") |
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15122 RXN-15122] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** serine_racemase ** t...") |
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| − | [[Category: | + | [[Category:Reaction]] |
| − | == | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15122 RXN-15122] == |
| − | * | + | * direction: |
| − | ** | + | ** LEFT-TO-RIGHT |
| − | * | + | * common name: |
| − | ** | + | ** ORF |
| − | * | + | ** serine_racemase |
| − | * | + | ** threonine_mitochondrial |
| − | * | + | |
| − | * | + | |
* Synonym(s): | * Synonym(s): | ||
| − | == | + | == Reaction Formula == |
| − | * | + | * With identifiers: |
| + | ** 1 [[THR]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[CPD-15056]][c] '''+''' 1 [[WATER]][c] | ||
| + | * With common name(s): | ||
| + | ** 1 L-threonine[c] '''=>''' 1 H+[c] '''+''' 1 (2Z)-2-aminobut-2-enoate[c] '''+''' 1 H2O[c] | ||
| + | |||
| + | == Genes associated with this reaction == | ||
| + | Genes have been associated with this reaction based on different elements listed below. | ||
| + | * Gene: [[Tiso_gene_8525]] | ||
** Source: [[annotation-in-silico_annotation]] | ** Source: [[annotation-in-silico_annotation]] | ||
| − | *** Assignment: | + | *** Assignment: EC-NUMBER |
| − | + | ||
** Source: [[orthology-esiliculosus]] | ** Source: [[orthology-esiliculosus]] | ||
| − | == Pathways | + | * Gene: [[Tiso_gene_17207]] |
| − | * [[ | + | ** Source: [[annotation-in-silico_annotation]] |
| − | * [[PWY- | + | *** Assignment: EC-NUMBER |
| − | * [[ | + | ** Source: [[annotation-experimental_annotation]] |
| + | *** Assignment: EC-NUMBER | ||
| + | * Gene: [[Tiso_gene_12535]] | ||
| + | ** Source: [[annotation-in-silico_annotation]] | ||
| + | *** Assignment: EC-NUMBER | ||
| + | ** Source: [[annotation-experimental_annotation]] | ||
| + | *** Assignment: EC-NUMBER | ||
| + | ** Source: [[orthology-esiliculosus]] | ||
| + | == Pathways == | ||
| + | * [[ILEUSYN-PWY]], L-isoleucine biosynthesis I (from threonine): [http://metacyc.org/META/NEW-IMAGE?object=ILEUSYN-PWY ILEUSYN-PWY] | ||
| + | ** '''7''' reactions found over '''7''' reactions in the full pathway | ||
| + | * [[PWY-5826]], hypoglycin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5826 PWY-5826] | ||
| + | ** '''4''' reactions found over '''14''' reactions in the full pathway | ||
| + | * [[PWY-5437]], L-threonine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5437 PWY-5437] | ||
| + | ** '''3''' reactions found over '''6''' reactions in the full pathway | ||
| + | == Reconstruction information == | ||
| + | * Category: [[orthology]] | ||
| + | ** Source: [[orthology-esiliculosus]] | ||
| + | *** Tool: [[pantograph]] | ||
| + | * Category: [[annotation]] | ||
| + | ** Source: [[annotation-in-silico_annotation]] | ||
| + | *** Tool: [[pathwaytools]] | ||
| + | ** Source: [[annotation-experimental_annotation]] | ||
| + | *** Tool: [[pathwaytools]] | ||
== External links == | == External links == | ||
| − | {{#set: | + | {{#set: direction=LEFT-TO-RIGHT}} |
| − | {{#set: | + | {{#set: common name=ORF}} |
| − | {{#set: | + | {{#set: common name=serine_racemase}} |
| − | {{#set: | + | {{#set: common name=threonine_mitochondrial}} |
| − | {{#set: | + | {{#set: gene associated=Tiso_gene_8525|Tiso_gene_17207|Tiso_gene_12535}} |
| − | {{#set: pathway | + | {{#set: in pathway=ILEUSYN-PWY|PWY-5826|PWY-5437}} |
| + | {{#set: reconstruction category=orthology|annotation}} | ||
| + | {{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}} | ||
| + | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
Latest revision as of 20:02, 21 March 2018
Contents
Reaction RXN-15122
- direction:
- LEFT-TO-RIGHT
- common name:
- ORF
- serine_racemase
- threonine_mitochondrial
- Synonym(s):
Reaction Formula
- With identifiers:
- With common name(s):
- 1 L-threonine[c] => 1 H+[c] + 1 (2Z)-2-aminobut-2-enoate[c] + 1 H2O[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: Tiso_gene_8525
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: orthology-esiliculosus
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_17207
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-experimental_annotation
- Assignment: EC-NUMBER
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_12535
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-experimental_annotation
- Assignment: EC-NUMBER
- Source: orthology-esiliculosus
- Source: annotation-in-silico_annotation
Pathways
- ILEUSYN-PWY, L-isoleucine biosynthesis I (from threonine): ILEUSYN-PWY
- 7 reactions found over 7 reactions in the full pathway
- PWY-5826, hypoglycin biosynthesis: PWY-5826
- 4 reactions found over 14 reactions in the full pathway
- PWY-5437, L-threonine degradation I: PWY-5437
- 3 reactions found over 6 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-esiliculosus
- Tool: pantograph
- Source: orthology-esiliculosus
- Category: annotation
- Source: annotation-in-silico_annotation
- Tool: pathwaytools
- Source: annotation-experimental_annotation
- Tool: pathwaytools
- Source: annotation-in-silico_annotation
