Difference between revisions of "Tiso gene 4191"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=H2NEOPTERINP3PYROPHOSPHOHYDRO-RXN H2NEOPTERINP3PYROPHOSPHOHYDRO-RXN] == * direction: ** LEFT-TO-RIG...")
(Created page with "Category:Gene == Gene Tiso_gene_4191 == * right end position: ** 14920 * transcription direction: ** NEGATIVE * left end position: ** 11562 * centisome position: ** 75.910...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=H2NEOPTERINP3PYROPHOSPHOHYDRO-RXN H2NEOPTERINP3PYROPHOSPHOHYDRO-RXN] ==
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== Gene Tiso_gene_4191 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 14920
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* ec number:
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* transcription direction:
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** [http://enzyme.expasy.org/EC/3.6.1.67 EC-3.6.1.67]
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** NEGATIVE
 +
* left end position:
 +
** 11562
 +
* centisome position:
 +
** 75.91097   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[ACYLCOASYN-RXN]]
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** 1 [[DIHYDRONEOPTERIN-P3]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[DIHYDRONEOPTERIN-P]][c] '''+''' 1 [[PPI]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 7,8-dihydroneopterin 3'-triphosphate[c] '''+''' 1 H2O[c] '''=>''' 1 H+[c] '''+''' 1 7,8-dihydroneopterin 3'-phosphate[c] '''+''' 1 diphosphate[c]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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== Genes associated with this reaction  ==
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* Reaction: [[LINOLENOYL-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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** Source: [[annotation-in-silico_annotation]]
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* Gene: [[Tiso_gene_17804]]
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*** Assignment: ec-number
−
** Source: [[orthology-esiliculosus]]
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** Source: [[annotation-experimental_annotation]]
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* Gene: [[Tiso_gene_12636]]
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*** Assignment: ec-number
−
** Source: [[orthology-esiliculosus]]
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* Reaction: [[R223-RXN]]
−
* Gene: [[Tiso_gene_15582]]
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** Source: [[annotation-in-silico_annotation]]
−
** Source: [[orthology-esiliculosus]]
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*** Assignment: ec-number
−
* Gene: [[Tiso_gene_12514]]
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** Source: [[annotation-experimental_annotation]]
−
** Source: [[orthology-athaliana]]
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*** Assignment: ec-number
−
** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-12184]]
−
* Gene: [[Tiso_gene_13784]]
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** Source: [[annotation-in-silico_annotation]]
−
** Source: [[orthology-esiliculosus]]
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*** Assignment: ec-number
−
* Gene: [[Tiso_gene_13729]]
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** Source: [[annotation-experimental_annotation]]
−
** Source: [[orthology-athaliana]]
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*** Assignment: ec-number
−
* Gene: [[Tiso_gene_43]]
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* Reaction: [[RXN-12978]]
−
** Source: [[orthology-athaliana]]
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** Source: [[annotation-in-silico_annotation]]
−
** Source: [[orthology-esiliculosus]]
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*** Assignment: ec-number
−
* Gene: [[Tiso_gene_277]]
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** Source: [[annotation-experimental_annotation]]
−
** Source: [[orthology-esiliculosus]]
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*** Assignment: ec-number
−
* Gene: [[Tiso_gene_14428]]
+
* Reaction: [[RXN-13290]]
−
** Source: [[orthology-synechocystis]]
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** Source: [[annotation-in-silico_annotation]]
−
* Gene: [[Tiso_gene_11387]]
+
*** Assignment: ec-number
−
** Source: [[orthology-athaliana]]
+
** Source: [[annotation-experimental_annotation]]
−
* Gene: [[Tiso_gene_15988]]
+
*** Assignment: ec-number
−
** Source: [[orthology-synechocystis]]
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* Reaction: [[RXN-13614]]
−
* Gene: [[Tiso_gene_2019]]
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** Source: [[annotation-in-silico_annotation]]
−
** Source: [[orthology-esiliculosus]]
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*** Assignment: ec-number
−
* Gene: [[Tiso_gene_10288]]
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** Source: [[annotation-experimental_annotation]]
−
** Source: [[orthology-esiliculosus]]
+
*** Assignment: ec-number
−
* Gene: [[Tiso_gene_19075]]
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* Reaction: [[RXN-16380]]
−
** Source: [[orthology-esiliculosus]]
+
** Source: [[annotation-in-silico_annotation]]
−
* Gene: [[Tiso_gene_8600]]
+
*** Assignment: ec-number
−
** Source: [[orthology-esiliculosus]]
+
** Source: [[annotation-experimental_annotation]]
−
* Gene: [[Tiso_gene_5713]]
+
*** Assignment: ec-number
−
** Source: [[orthology-athaliana]]
+
* Reaction: [[RXN-16389]]
−
** Source: [[orthology-esiliculosus]]
+
** Source: [[annotation-in-silico_annotation]]
−
* Gene: [[Tiso_gene_8601]]
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*** Assignment: ec-number
−
** Source: [[orthology-esiliculosus]]
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** Source: [[annotation-experimental_annotation]]
−
* Gene: [[Tiso_gene_18343]]
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*** Assignment: ec-number
−
** Source: [[orthology-athaliana]]
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* Reaction: [[RXN-16393]]
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** Source: [[orthology-esiliculosus]]
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** Source: [[annotation-in-silico_annotation]]
−
* Gene: [[Tiso_gene_2924]]
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*** Assignment: ec-number
−
** Source: [[orthology-athaliana]]
+
** Source: [[annotation-experimental_annotation]]
−
** Source: [[orthology-esiliculosus]]
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*** Assignment: ec-number
−
* Gene: [[Tiso_gene_10158]]
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* Reaction: [[RXN-16401]]
−
** Source: [[orthology-athaliana]]
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** Source: [[annotation-in-silico_annotation]]
−
* Gene: [[Tiso_gene_16176]]
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*** Assignment: ec-number
−
** Source: [[orthology-esiliculosus]]
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** Source: [[annotation-experimental_annotation]]
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* Gene: [[Tiso_gene_6277]]
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*** Assignment: ec-number
−
** Source: [[orthology-athaliana]]
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* Reaction: [[RXN-16402]]
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** Source: [[orthology-esiliculosus]]
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** Source: [[annotation-in-silico_annotation]]
−
* Gene: [[Tiso_gene_13847]]
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*** Assignment: ec-number
−
** Source: [[orthology-esiliculosus]]
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** Source: [[annotation-experimental_annotation]]
−
* Gene: [[Tiso_gene_3667]]
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*** Assignment: ec-number
−
** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-16415]]
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* Gene: [[Tiso_gene_1142]]
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** Source: [[annotation-in-silico_annotation]]
−
** Source: [[orthology-esiliculosus]]
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*** Assignment: ec-number
−
* Gene: [[Tiso_gene_17467]]
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** Source: [[annotation-experimental_annotation]]
−
** Source: [[orthology-athaliana]]
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*** Assignment: ec-number
−
* Gene: [[Tiso_gene_8599]]
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* Reaction: [[RXN-16418]]
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** Source: [[orthology-esiliculosus]]
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** Source: [[annotation-in-silico_annotation]]
−
* Gene: [[Tiso_gene_6144]]
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*** Assignment: ec-number
−
** Source: [[orthology-athaliana]]
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** Source: [[annotation-experimental_annotation]]
−
* Gene: [[Tiso_gene_7067]]
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*** Assignment: ec-number
−
** Source: [[orthology-athaliana]]
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* Reaction: [[RXN-7904]]
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** Source: [[orthology-esiliculosus]]
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** Source: [[annotation-in-silico_annotation]]
−
* Gene: [[Tiso_gene_2747]]
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*** Assignment: ec-number
−
** Source: [[orthology-synechocystis]]
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** Source: [[annotation-experimental_annotation]]
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* Gene: [[Tiso_gene_1799]]
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*** Assignment: ec-number
−
** Source: [[orthology-athaliana]]
+
* Reaction: [[RXN-9623]]
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** Source: [[orthology-esiliculosus]]
+
** Source: [[annotation-in-silico_annotation]]
−
* Gene: [[Tiso_gene_3314]]
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*** Assignment: ec-number
−
** Source: [[orthology-esiliculosus]]
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** Source: [[annotation-experimental_annotation]]
−
* Gene: [[Tiso_gene_13604]]
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*** Assignment: ec-number
−
** Source: [[orthology-esiliculosus]]
+
−
* Gene: [[Tiso_gene_4112]]
+
−
** Source: [[orthology-athaliana]]
+
−
** Source: [[orthology-esiliculosus]]
+
−
* Gene: [[Tiso_gene_10760]]
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−
** Source: [[orthology-synechocystis]]
+
−
* Gene: [[Tiso_gene_16712]]
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−
** Source: [[orthology-athaliana]]
+
−
** Source: [[orthology-esiliculosus]]
+
−
* Gene: [[Tiso_gene_6767]]
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−
** Source: [[orthology-athaliana]]
+
−
** Source: [[orthology-esiliculosus]]
+
−
* Gene: [[Tiso_gene_4645]]
+
−
** Source: [[orthology-esiliculosus]]
+
−
== Pathways  ==
+
−
* [[PWY-6147]], 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6147 PWY-6147]
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−
** '''5''' reactions found over '''5''' reactions in the full pathway
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−
== Reconstruction information  ==
+
−
* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
 
** Source: [[orthology-athaliana]]
−
*** Tool: [[pantograph]]
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* Reaction: [[RXN-9644]]
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** Source: [[orthology-synechocystis]]
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** Source: [[annotation-in-silico_annotation]]
−
*** Tool: [[pantograph]]
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*** Assignment: ec-number
−
** Source: [[orthology-esiliculosus]]
+
** Source: [[annotation-experimental_annotation]]
−
*** Tool: [[pantograph]]
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*** Assignment: ec-number
 +
* Reaction: [[RXN-9673]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN0-7238]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN0-7239]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN0-7248]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN66-469]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN66-477]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN66-480]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN66-483]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN66-484]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[TRANS-RXN0-623]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
== Pathways associated ==
 +
* [[PWY-6920]]
 +
* [[P221-PWY]]
 +
* [[PWY-321]]
 +
* [[PWY-5972]]
 +
* [[PWY-5971]]
 +
* [[PWY-7033]]
 +
* [[PWY-5136]]
 +
* [[PWY66-389]]
 +
* [[PWY-7288]]
 +
* [[PWY-6733]]
 +
* [[PWY-7094]]
 +
* [[PWY66-391]]
 +
* [[FAO-PWY]]
 +
* [[PWY-1121]]
 +
* [[PWY-6873]]
 +
* [[PWY-5147]]
 +
* [[PWY-5143]]
 +
* [[PWY-5885]]
 +
* [[PWY-7724]]
 +
* [[PWY-6001]]
 +
* [[PWY-6000]]
 +
* [[PWY-7049]]
 +
* [[PWY66-387]]
 +
* [[PWY-5989]]
 +
* [[PWY-6803]]
 +
* [[PWY66-388]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: right end position=14920}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25302 25302]
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{{#set: transcription direction=NEGATIVE}}
−
* LIGAND-RXN:
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{{#set: left end position=11562}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R04638 R04638]
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{{#set: centisome position=75.91097    }}
−
{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=ACYLCOASYN-RXN|LINOLENOYL-RXN|R223-RXN|RXN-12184|RXN-12978|RXN-13290|RXN-13614|RXN-16380|RXN-16389|RXN-16393|RXN-16401|RXN-16402|RXN-16415|RXN-16418|RXN-7904|RXN-9623|RXN-9644|RXN-9673|RXN0-7238|RXN0-7239|RXN0-7248|RXN66-469|RXN66-477|RXN66-480|RXN66-483|RXN66-484|TRANS-RXN0-623}}
−
{{#set: ec number=EC-3.6.1.67}}
+
{{#set: pathway associated=PWY-6920|P221-PWY|PWY-321|PWY-5972|PWY-5971|PWY-7033|PWY-5136|PWY66-389|PWY-7288|PWY-6733|PWY-7094|PWY66-391|FAO-PWY|PWY-1121|PWY-6873|PWY-5147|PWY-5143|PWY-5885|PWY-7724|PWY-6001|PWY-6000|PWY-7049|PWY66-387|PWY-5989|PWY-6803|PWY66-388}}
−
{{#set: gene associated=Tiso_gene_17804|Tiso_gene_12636|Tiso_gene_15582|Tiso_gene_12514|Tiso_gene_13784|Tiso_gene_13729|Tiso_gene_43|Tiso_gene_277|Tiso_gene_14428|Tiso_gene_11387|Tiso_gene_15988|Tiso_gene_2019|Tiso_gene_10288|Tiso_gene_19075|Tiso_gene_8600|Tiso_gene_5713|Tiso_gene_8601|Tiso_gene_18343|Tiso_gene_2924|Tiso_gene_10158|Tiso_gene_16176|Tiso_gene_6277|Tiso_gene_13847|Tiso_gene_3667|Tiso_gene_1142|Tiso_gene_17467|Tiso_gene_8599|Tiso_gene_6144|Tiso_gene_7067|Tiso_gene_2747|Tiso_gene_1799|Tiso_gene_3314|Tiso_gene_13604|Tiso_gene_4112|Tiso_gene_10760|Tiso_gene_16712|Tiso_gene_6767|Tiso_gene_4645}}
+
−
{{#set: in pathway=PWY-6147}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction source=orthology-athaliana|orthology-synechocystis|orthology-esiliculosus}}
+
−
{{#set: reconstruction tool=pantograph}}
+

Latest revision as of 20:05, 21 March 2018

Gene Tiso_gene_4191

  • right end position:
    • 14920
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 11562
  • centisome position:
    • 75.91097
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_4191&oldid=45879"