Difference between revisions of "PORPHOBILSYNTH-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=Palmitoleoyl-ACPs Palmitoleoyl-ACPs] == * common name: ** a palmitoleoyl-[acp] * Synonym(s): **...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PORPHOBILSYNTH-RXN PORPHOBILSYNTH-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** delta-ami...")
 
Line 1: Line 1:
−
[[Category:Metabolite]]
+
[[Category:Reaction]]
−
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=Palmitoleoyl-ACPs Palmitoleoyl-ACPs] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PORPHOBILSYNTH-RXN PORPHOBILSYNTH-RXN] ==
 +
* direction:
 +
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** a palmitoleoyl-[acp]
+
** delta-aminolevulinic_acid_dehydratase_chloroplastic
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/4.2.1.24 EC-4.2.1.24]
 
* Synonym(s):
 
* Synonym(s):
−
** a (Z)-hexadec-9-enoyl-[acp]
 
−
** a (Z)-hexadec-9-enoyl-[acyl-carrier-protein]
 
−
** a cis-hexadec-9-enoyl-[acp]
 
−
** a cis-hexadec-9-enoyl-[acyl-carrier-protein]
 
  
−
== Reaction(s) known to consume the compound ==
+
== Reaction Formula ==
−
* [[RXN-17020]]
+
* With identifiers:
−
* [[2.3.1.179-RXN]]
+
** 2 [[5-AMINO-LEVULINATE]][c] '''=>''' 1 [[PORPHOBILINOGEN]][c] '''+''' 1 [[PROTON]][c] '''+''' 2 [[WATER]][c]
−
* [[RXN-17013]]
+
* With common name(s):
−
* [[RXN-17012]]
+
** 2 5-aminolevulinate[c] '''=>''' 1 porphobilinogen[c] '''+''' 1 H+[c] '''+''' 2 H2O[c]
−
* [[RXN-9550]]
+
 
−
== Reaction(s) known to produce the compound ==
+
== Genes associated with this reaction  ==
−
* [[RXN-8389]]
+
Genes have been associated with this reaction based on different elements listed below.
−
* [[RXN-10661]]
+
* Gene: [[Tiso_gene_13382]]
−
== Reaction(s) of unknown directionality ==
+
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-esiliculosus]]
 +
** Source: [[orthology-creinhardtii]]
 +
== Pathways  ==
 +
* [[PWY-5189]], tetrapyrrole biosynthesis II (from glycine): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5189 PWY-5189]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5188]], tetrapyrrole biosynthesis I (from glutamate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5188 PWY-5188]
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-creinhardtii]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-synechocystis]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: common name=a palmitoleoyl-[acp]}}
+
* RHEA:
−
{{#set: common name=a (Z)-hexadec-9-enoyl-[acp]|a (Z)-hexadec-9-enoyl-[acyl-carrier-protein]|a cis-hexadec-9-enoyl-[acp]|a cis-hexadec-9-enoyl-[acyl-carrier-protein]}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24064 24064]
−
{{#set: consumed by=RXN-17020|2.3.1.179-RXN|RXN-17013|RXN-17012|RXN-9550}}
+
* LIGAND-RXN:
−
{{#set: produced by=RXN-8389|RXN-10661}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R00036 R00036]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P06214 P06214]
 +
** [http://www.uniprot.org/uniprot/P13716 P13716]
 +
** [http://www.uniprot.org/uniprot/Q7M315 Q7M315]
 +
** [http://www.uniprot.org/uniprot/P30124 P30124]
 +
** [http://www.uniprot.org/uniprot/Q9JV37 Q9JV37]
 +
** [http://www.uniprot.org/uniprot/P30950 P30950]
 +
** [http://www.uniprot.org/uniprot/Q60178 Q60178]
 +
** [http://www.uniprot.org/uniprot/Q9PNU5 Q9PNU5]
 +
** [http://www.uniprot.org/uniprot/Q59295 Q59295]
 +
** [http://www.uniprot.org/uniprot/Q02250 Q02250]
 +
** [http://www.uniprot.org/uniprot/P10518 P10518]
 +
** [http://www.uniprot.org/uniprot/Q43148 Q43148]
 +
** [http://www.uniprot.org/uniprot/Q42682 Q42682]
 +
** [http://www.uniprot.org/uniprot/Q43058 Q43058]
 +
** [http://www.uniprot.org/uniprot/Q59643 Q59643]
 +
** [http://www.uniprot.org/uniprot/Q9S8B1 Q9S8B1]
 +
** [http://www.uniprot.org/uniprot/P05373 P05373]
 +
** [http://www.uniprot.org/uniprot/P0ACB2 P0ACB2]
 +
** [http://www.uniprot.org/uniprot/Q42836 Q42836]
 +
** [http://www.uniprot.org/uniprot/P43210 P43210]
 +
** [http://www.uniprot.org/uniprot/Q9ZNC9 Q9ZNC9]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=delta-aminolevulinic_acid_dehydratase_chloroplastic}}
 +
{{#set: ec number=EC-4.2.1.24}}
 +
{{#set: gene associated=Tiso_gene_13382}}
 +
{{#set: in pathway=PWY-5189|PWY-5188}}
 +
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:07, 21 March 2018

Reaction PORPHOBILSYNTH-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • delta-aminolevulinic_acid_dehydratase_chloroplastic
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5189, tetrapyrrole biosynthesis II (from glycine): PWY-5189
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-5188, tetrapyrrole biosynthesis I (from glutamate): PWY-5188
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PORPHOBILSYNTH-RXN&oldid=46090"