Difference between revisions of "Tiso gene 2105"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2-KETO-ADIPATE-DEHYDROG-RXN 2-KETO-ADIPATE-DEHYDROG-RXN] == * direction: ** LEFT-TO-RIGHT * Synonym...")
(Created page with "Category:Gene == Gene Tiso_gene_2105 == * right end position: ** 20045 * transcription direction: ** POSITIVE * left end position: ** 18554 * centisome position: ** 61.372...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2-KETO-ADIPATE-DEHYDROG-RXN 2-KETO-ADIPATE-DEHYDROG-RXN] ==
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== Gene Tiso_gene_2105 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 20045
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* transcription direction:
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** POSITIVE
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* left end position:
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** 18554
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* centisome position:
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** 61.372055   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[MRNA-GUANINE-N7--METHYLTRANSFERASE-RXN]]
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** 1 [[2K-ADIPATE]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[GLUTARYL-COA]][c]
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* With common name(s):
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** 1 2-oxoadipate[c] '''+''' 1 NAD+[c] '''+''' 1 coenzyme A[c] '''=>''' 1 CO2[c] '''+''' 1 NADH[c] '''+''' 1 glutaryl-CoA[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_9330]]
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** Source: [[orthology-athaliana]]
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* Gene: [[Tiso_gene_10209]]
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** Source: [[orthology-athaliana]]
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== Pathways  ==
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* [[PWY-5652]], 2-amino-3-carboxymuconate semialdehyde degradation to glutaryl-CoA: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5652 PWY-5652]
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** '''1''' reactions found over '''5''' reactions in the full pathway
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* [[PWY66-425]], L-lysine degradation II (L-pipecolate pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-425 PWY66-425]
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** '''3''' reactions found over '''8''' reactions in the full pathway
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* [[LYSINE-DEG1-PWY]], L-lysine degradation XI (mammalian): [http://metacyc.org/META/NEW-IMAGE?object=LYSINE-DEG1-PWY LYSINE-DEG1-PWY]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: automated-name-match
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== Pathways associated ==
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* [[PWY-7375]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=20045}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30795 30795]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=18554}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01933 R01933]
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{{#set: centisome position=61.372055    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=MRNA-GUANINE-N7--METHYLTRANSFERASE-RXN}}
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{{#set: gene associated=Tiso_gene_9330|Tiso_gene_10209}}
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{{#set: pathway associated=PWY-7375}}
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{{#set: in pathway=PWY-5652|PWY66-425|LYSINE-DEG1-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=orthology-athaliana|annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 20:08, 21 March 2018

Gene Tiso_gene_2105

  • right end position:
    • 20045
  • transcription direction:
    • POSITIVE
  • left end position:
    • 18554
  • centisome position:
    • 61.372055
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_2105&oldid=46242"