Difference between revisions of "OROTPDECARB-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12893 RXN-12893] == * direction: ** LEFT-TO-RIGHT * common name: ** cyanate_hydratase * ec numb...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=OROTPDECARB-RXN OROTPDECARB-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.ex...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12893 RXN-12893] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=OROTPDECARB-RXN OROTPDECARB-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** cyanate_hydratase
 
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/4.2.1.104 EC-4.2.1.104]
+
** [http://enzyme.expasy.org/EC/4.1.1.23 EC-4.1.1.23]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 3 [[PROTON]][c] '''+''' 1 [[HCO3]][c] '''+''' 1 [[CPD-69]][c] '''=>''' 2 [[CARBON-DIOXIDE]][c] '''+''' 1 [[AMMONIUM]][c]
+
** 1 [[PROTON]][c] '''+''' 1 [[OROTIDINE-5-PHOSPHATE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[UMP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 3 H+[c] '''+''' 1 hydrogencarbonate[c] '''+''' 1 cyanate[c] '''=>''' 2 CO2[c] '''+''' 1 ammonium[c]
+
** 1 H+[c] '''+''' 1 orotidine 5'-phosphate[c] '''=>''' 1 CO2[c] '''+''' 1 UMP[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Tiso_gene_15128]]
+
* Gene: [[Tiso_gene_20050]]
−
** Source: [[annotation-in-silico_annotation]]
+
** Source: [[orthology-synechocystis]]
−
*** Assignment: AUTOMATED-NAME-MATCH
+
* Gene: [[Tiso_gene_18647]]
−
** Source: [[annotation-experimental_annotation]]
+
** Source: [[orthology-athaliana]]
−
*** Assignment: AUTOMATED-NAME-MATCH
+
** Source: [[orthology-esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-7790]], UMP biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7790 PWY-7790]
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7791]], UMP biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7791 PWY-7791]
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-5686]], UMP biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5686 PWY-5686]
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-synechocystis]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11596 11596]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R07315 R07315]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00965 R00965]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P11172 P11172]
 +
** [http://www.uniprot.org/uniprot/Q9KQT7 Q9KQT7]
 +
** [http://www.uniprot.org/uniprot/Q9CFW9 Q9CFW9]
 +
** [http://www.uniprot.org/uniprot/P24220 P24220]
 +
** [http://www.uniprot.org/uniprot/P0A5M7 P0A5M7]
 +
** [http://www.uniprot.org/uniprot/P43812 P43812]
 +
** [http://www.uniprot.org/uniprot/Q9PIC1 Q9PIC1]
 +
** [http://www.uniprot.org/uniprot/P10652 P10652]
 +
** [http://www.uniprot.org/uniprot/P07817 P07817]
 +
** [http://www.uniprot.org/uniprot/P03962 P03962]
 +
** [http://www.uniprot.org/uniprot/P14017 P14017]
 +
** [http://www.uniprot.org/uniprot/P07691 P07691]
 +
** [http://www.uniprot.org/uniprot/P08244 P08244]
 +
** [http://www.uniprot.org/uniprot/P13439 P13439]
 +
** [http://www.uniprot.org/uniprot/P05035 P05035]
 +
** [http://www.uniprot.org/uniprot/P09463 P09463]
 +
** [http://www.uniprot.org/uniprot/P14964 P14964]
 +
** [http://www.uniprot.org/uniprot/P21593 P21593]
 +
** [http://www.uniprot.org/uniprot/P15188 P15188]
 +
** [http://www.uniprot.org/uniprot/P07922 P07922]
 +
** [http://www.uniprot.org/uniprot/P0A5M6 P0A5M6]
 +
** [http://www.uniprot.org/uniprot/Q9JV18 Q9JV18]
 +
** [http://www.uniprot.org/uniprot/P25971 P25971]
 +
** [http://www.uniprot.org/uniprot/P46535 P46535]
 +
** [http://www.uniprot.org/uniprot/P31754 P31754]
 +
** [http://www.uniprot.org/uniprot/P32430 P32430]
 +
** [http://www.uniprot.org/uniprot/Q01637 Q01637]
 +
** [http://www.uniprot.org/uniprot/P09556 P09556]
 +
** [http://www.uniprot.org/uniprot/P21594 P21594]
 +
** [http://www.uniprot.org/uniprot/Q06375 Q06375]
 +
** [http://www.uniprot.org/uniprot/P41769 P41769]
 +
** [http://www.uniprot.org/uniprot/Q18516 Q18516]
 +
** [http://www.uniprot.org/uniprot/Q59654 Q59654]
 +
** [http://www.uniprot.org/uniprot/Q42586 Q42586]
 +
** [http://www.uniprot.org/uniprot/P48844 P48844]
 +
** [http://www.uniprot.org/uniprot/P43230 P43230]
 +
** [http://www.uniprot.org/uniprot/Q42942 Q42942]
 +
** [http://www.uniprot.org/uniprot/O74110 O74110]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=cyanate_hydratase}}
+
{{#set: ec number=EC-4.1.1.23}}
−
{{#set: ec number=EC-4.2.1.104}}
+
{{#set: gene associated=Tiso_gene_20050|Tiso_gene_18647}}
−
{{#set: gene associated=Tiso_gene_15128}}
+
{{#set: in pathway=PWY-7790|PWY-7791|PWY-5686}}
−
{{#set: in pathway=}}
+
{{#set: reconstruction category=orthology|manual|annotation}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction source=orthology-athaliana|annotation-in-silico_annotation|orthology-synechocystis|orthology-esiliculosus|manual-primary_network}}
−
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction tool=pathwaytools}}
+

Latest revision as of 20:09, 21 March 2018

Reaction OROTPDECARB-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7790, UMP biosynthesis II: PWY-7790
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-7791, UMP biosynthesis III: PWY-7791
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-5686, UMP biosynthesis I: PWY-5686
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=OROTPDECARB-RXN&oldid=46320"