Difference between revisions of "TYROSINE--TRNA-LIGASE-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-305 RXN0-305] == * direction: ** REVERSIBLE * common name: ** hydroxypyruvate_isomerase * ec n...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TYROSINE--TRNA-LIGASE-RXN TYROSINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-305 RXN0-305] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TYROSINE--TRNA-LIGASE-RXN TYROSINE--TRNA-LIGASE-RXN] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** hydroxypyruvate_isomerase
+
** mitochondrial_tyrosyl-trna_synthetase
 +
** methionyl-trna
 +
** ORF
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/5.3.1.22 EC-5.3.1.22]
+
** [http://enzyme.expasy.org/EC/6.1.1.1 EC-6.1.1.1]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[OH-PYR]][c] '''<=>''' 1 [[TARTRONATE-S-ALD]][c]
+
** 1 [[TYR]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[TYR-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[Charged-TYR-tRNAs]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 hydroxypyruvate[c] '''<=>''' 1 tartronate semialdehyde[c]
+
** 1 L-tyrosine[c] '''+''' 1 ATP[c] '''+''' 1 a tRNAtyr[c] '''=>''' 1 AMP[c] '''+''' 1 diphosphate[c] '''+''' 1 an L-tyrosyl-[tRNAtyr][c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Tiso_gene_11604]]
+
* Gene: [[Tiso_gene_10378]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Assignment: AUTOMATED-NAME-MATCH
+
*** Assignment: EC-NUMBER
−
* Gene: [[Tiso_gene_2954]]
+
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_4174]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Assignment: AUTOMATED-NAME-MATCH
+
*** Assignment: EC-NUMBER
−
* Gene: [[Tiso_gene_2955]]
+
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_12171]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Assignment: AUTOMATED-NAME-MATCH
+
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_4175]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
 +
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
 +
** '''21''' reactions found over '''21''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11952 11952]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10220 10220]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01394 R01394]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02918 R02918]
−
{{#set: direction=REVERSIBLE}}
+
* UNIPROT:
−
{{#set: common name=hydroxypyruvate_isomerase}}
+
** [http://www.uniprot.org/uniprot/P28669 P28669]
−
{{#set: ec number=EC-5.3.1.22}}
+
** [http://www.uniprot.org/uniprot/P22326 P22326]
−
{{#set: gene associated=Tiso_gene_11604|Tiso_gene_2954|Tiso_gene_2955}}
+
** [http://www.uniprot.org/uniprot/P36421 P36421]
−
{{#set: in pathway=}}
+
** [http://www.uniprot.org/uniprot/P41256 P41256]
−
{{#set: reconstruction category=annotation}}
+
** [http://www.uniprot.org/uniprot/O51343 O51343]
−
{{#set: reconstruction source=annotation-in-silico_annotation}}
+
** [http://www.uniprot.org/uniprot/Q9PN27 Q9PN27]
−
{{#set: reconstruction tool=pathwaytools}}
+
** [http://www.uniprot.org/uniprot/Q9CIH5 Q9CIH5]
 +
** [http://www.uniprot.org/uniprot/Q9ZL69 Q9ZL69]
 +
** [http://www.uniprot.org/uniprot/P47693 P47693]
 +
** [http://www.uniprot.org/uniprot/Q9ZCZ4 Q9ZCZ4]
 +
** [http://www.uniprot.org/uniprot/P43836 P43836]
 +
** [http://www.uniprot.org/uniprot/O83806 O83806]
 +
** [http://www.uniprot.org/uniprot/Q57834 Q57834]
 +
** [http://www.uniprot.org/uniprot/P56417 P56417]
 +
** [http://www.uniprot.org/uniprot/O67632 O67632]
 +
** [http://www.uniprot.org/uniprot/O58739 O58739]
 +
** [http://www.uniprot.org/uniprot/Q9WYU8 Q9WYU8]
 +
** [http://www.uniprot.org/uniprot/O27795 O27795]
 +
** [http://www.uniprot.org/uniprot/O84065 O84065]
 +
** [http://www.uniprot.org/uniprot/Q9JVY6 Q9JVY6]
 +
** [http://www.uniprot.org/uniprot/P48527 P48527]
 +
** [http://www.uniprot.org/uniprot/Q49900 Q49900]
 +
** [http://www.uniprot.org/uniprot/P75122 P75122]
 +
** [http://www.uniprot.org/uniprot/P73141 P73141]
 +
** [http://www.uniprot.org/uniprot/P73144 P73144]
 +
** [http://www.uniprot.org/uniprot/P95982 P95982]
 +
** [http://www.uniprot.org/uniprot/P00952 P00952]
 +
** [http://www.uniprot.org/uniprot/P04077 P04077]
 +
** [http://www.uniprot.org/uniprot/P0AGJ9 P0AGJ9]
 +
** [http://www.uniprot.org/uniprot/P12063 P12063]
 +
** [http://www.uniprot.org/uniprot/P93363 P93363]
 +
** [http://www.uniprot.org/uniprot/O14055 O14055]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=mitochondrial_tyrosyl-trna_synthetase}}
 +
{{#set: common name=methionyl-trna}}
 +
{{#set: common name=ORF}}
 +
{{#set: ec number=EC-6.1.1.1}}
 +
{{#set: gene associated=Tiso_gene_10378|Tiso_gene_4174|Tiso_gene_12171|Tiso_gene_4175}}
 +
{{#set: in pathway=TRNA-CHARGING-PWY}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 21:09, 21 March 2018

Reaction TYROSINE--TRNA-LIGASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • mitochondrial_tyrosyl-trna_synthetase
    • methionyl-trna
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 L-tyrosine[c] + 1 ATP[c] + 1 a tRNAtyr[c] => 1 AMP[c] + 1 diphosphate[c] + 1 an L-tyrosyl-[tRNAtyr][c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links






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